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jkimlab / DESCHRAMBLER

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Compilation failed #2

Closed gepmat closed 4 years ago

gepmat commented 4 years ago

Make seems to work, but I get this error while running the main script: "UNIVERSAL does not export anything at /home/.../DESCHRAMBLER-master/script/../lib/perl/Bio/Tree/TreeFunctionsI.pm line 94. Compilation failed in require at /usr/share/perl/5.22/base.pm line 97."

It seems to be the main issue here, could you help me with this ?

Thanks,

Matthieu

jkimlab commented 4 years ago

Dear Matthieu,

I don’t know the exact reason, but it may be related with Perl libraries in your computer (conflict with the ones included in DESCHRAMBLER?). I recommend using other machines if you have.

Best,

Jaebum

On 11 Jul 2019, at 9:00 PM, gepmat notifications@github.com wrote:

Make seems to work, but I get this error while running the script: "Compilation failed in require at /usr/share/perl/5.22/base.pm line 97."

It seems to be the main issue here, could you help me with this ?

Thanks,

Matthieu

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/jkimlab/DESCHRAMBLER/issues/2?email_source=notifications&email_token=AEU6PVYRUMMU4EZ6YOPNGL3P64OE7A5CNFSM4IBCQEMKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4G6TRZIA, or mute the thread https://github.com/notifications/unsubscribe-auth/AEU6PV76SL2SKLRRPKEX22DP64OE7ANCNFSM4IBCQEMA.

gepmat commented 4 years ago

dear Jaebum,

what are all the dependencies used in DESHCRAMBLER ? we tested the software on a virtual machine and it still not works whereas no conflict should have been possible there.. run your program should be a huge help for our project and I hope it will work with your help.

regards,

Matthieu

De : jkimlab notifications@github.com Envoyé : vendredi 12 juillet 2019 07:42 À : jkimlab/DESCHRAMBLER Cc : gepmat; State change Objet : Re: [jkimlab/DESCHRAMBLER] Compilation failed (#2)

Dear Matthieu,

I don’t know the exact reason, but it may be related with Perl libraries in your computer (conflict with the ones included in DESCHRAMBLER?). I recommend using other machines if you have.

Best,

Jaebum

On 11 Jul 2019, at 9:00 PM, gepmat notifications@github.com wrote:

Make seems to work, but I get this error while running the script: "Compilation failed in require at /usr/share/perl/5.22/base.pm line 97."

It seems to be the main issue here, could you help me with this ?

Thanks,

Matthieu

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/jkimlab/DESCHRAMBLER/issues/2?email_source=notifications&email_token=AEU6PVYRUMMU4EZ6YOPNGL3P64OE7A5CNFSM4IBCQEMKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4G6TRZIA, or mute the thread https://github.com/notifications/unsubscribe-auth/AEU6PV76SL2SKLRRPKEX22DP64OE7ANCNFSM4IBCQEMA.

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jkimlab commented 4 years ago

Thanks a lot for using our program.

All Perl modules required for DESCHRAMBLER are in the "lib/perl” directory. If it is because of Perl module conflict, I think you can install all modules in the “lib/perl” directories in your server, and remove the line starting with “use lib …” in all Perl script files in the “script” directory.

Thanks, Jaebum

On 12 Jul 2019, at 5:55 PM, gepmat notifications@github.com wrote:

dear Jaebum,

what are all the dependencies used in DESHCRAMBLER ? we tested the software on a virtual machine and it still not works whereas no conflict should have been possible there.. run your program should be a huge help for our project and I hope it will work with your help.

regards,

Matthieu

De : jkimlab notifications@github.com Envoyé : vendredi 12 juillet 2019 07:42 À : jkimlab/DESCHRAMBLER Cc : gepmat; State change Objet : Re: [jkimlab/DESCHRAMBLER] Compilation failed (#2)

Dear Matthieu,

I don’t know the exact reason, but it may be related with Perl libraries in your computer (conflict with the ones included in DESCHRAMBLER?). I recommend using other machines if you have.

Best,

Jaebum

On 11 Jul 2019, at 9:00 PM, gepmat notifications@github.com wrote:

Make seems to work, but I get this error while running the script: "Compilation failed in require at /usr/share/perl/5.22/base.pm line 97."

It seems to be the main issue here, could you help me with this ?

Thanks,

Matthieu

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/jkimlab/DESCHRAMBLER/issues/2?email_source=notifications&email_token=AEU6PVYRUMMU4EZ6YOPNGL3P64OE7A5CNFSM4IBCQEMKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4G6TRZIA, or mute the thread https://github.com/notifications/unsubscribe-auth/AEU6PV76SL2SKLRRPKEX22DP64OE7ANCNFSM4IBCQEMA.

— You are receiving this because you modified the open/close state. Reply to this email directly, view it on GitHubhttps://github.com/jkimlab/DESCHRAMBLER/issues/2?email_source=notifications&email_token=ALC2BN27XDV662RAKRAQN3DP7AKS7A5CNFSM4IBCQEMKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODZYXV5Y#issuecomment-510753527, or mute the threadhttps://github.com/notifications/unsubscribe-auth/ALC2BN3MU6VBM3EVTXFGZN3P7AKS7ANCNFSM4IBCQEMA. — You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/jkimlab/DESCHRAMBLER/issues/2?email_source=notifications&email_token=AEU6PV7ELCIXCLN5O6EWI7TP7BBJVA5CNFSM4IBCQEMKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGODZZFFVI#issuecomment-510808789, or mute the thread https://github.com/notifications/unsubscribe-auth/AEU6PV3T73BT6VOXPWIRNU3P7BBJVANCNFSM4IBCQEMA.