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jkimlab / DESCHRAMBLER

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Compilation failed #3

Closed gepmat closed 2 years ago

gepmat commented 4 years ago

Make seems to work, but I get this error while running the main script: "UNIVERSAL does not export anything at /home/.../DESCHRAMBLER-master/script/../lib/perl/Bio/Tree/TreeFunctionsI.pm line 94. Compilation failed in require at /usr/share/perl/5.22/base.pm line 97."

It seems to be the main issue here, could you help me with this ? Which version of perl did you use to run your script ?

Thanks,

Matthieu

huangziyan11111 commented 4 years ago

I met the same problem, please help us to solve. thank you.

jkimlab commented 4 years ago

Thanks for using DESCHRAMBLER. The following may be the solution to your problem.

All Perl modules required for DESCHRAMBLER are in the "lib/perl” directory. If it is because of Perl module conflict, I think you can install all modules in the “lib/perl” directories in your server, and remove the line starting with “use lib …” in all Perl script files in the “script” directory.

Thanks.

On Aug 26, 2019, at 12:32 PM, huangziyan11111 notifications@github.com wrote:

I met the same problem, please help us to solve. thank you.

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huangziyan11111 commented 4 years ago

Ok. thank you for your reply. I find the module and copy it to the cwd path, it can be solved also.

huangziyan11111@163.com

From: jkimlab Date: 2019-08-26 11:46 To: jkimlab/DESCHRAMBLER CC: huangziyan11111; Comment Subject: Re: [jkimlab/DESCHRAMBLER] Compilation failed (#3) Thanks for using DESCHRAMBLER. The following may be the solution to your problem.

All Perl modules required for DESCHRAMBLER are in the "lib/perl” directory. If it is because of Perl module conflict, I think you can install all modules in the “lib/perl” directories in your server, and remove the line starting with “use lib …” in all Perl script files in the “script” directory.

Thanks.

On Aug 26, 2019, at 12:32 PM, huangziyan11111 notifications@github.com wrote:

I met the same problem, please help us to solve. thank you.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/jkimlab/DESCHRAMBLER/issues/3?email_source=notifications&email_token=AEU6PV7BA6SAYDGJIPKVXIDQGNFFBA5CNFSM4IBC3PL2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOD5DFFHI#issuecomment-524702365, or mute the thread https://github.com/notifications/unsubscribe-auth/AEU6PVZWT2QMB7VX5RIFYRLQGNFFBANCNFSM4IBC3PLQ.

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