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jkimlab / DESCHRAMBLER

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out of order #4

Closed lskfs closed 3 years ago

lskfs commented 4 years ago

partitionGenomes run into "out of order" and then the program stop.

I have tried range of resolutions (10K, 50K, 100K, 200K, 300K) to solve this but none works.

Then I filtered the chain file to drop out alignment with length less 50K and got the same error.

Could you kindly explain how this happened? if there is any solution?

jkimlab commented 4 years ago

I think it is a problem in the chain/net files. How did you make the chain/net files? Please regenerate the chain/net files and try again.

Thanks.

On Apr 26, 2020, at 8:46 PM, moveAFs notifications@github.com wrote:

partitionGenomes run into "out of order" and then the program stop.

I have tried range of resolutions (10K, 50K, 100K, 200K, 300K) to solve this but none works.

Then I filtered the chain file to drop out alignment with length less 50K and got the same error.

Could you kindly explain how this happened? if there is any solution?

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