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jkimlab / IMAP

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Unable to install the tool using gitclone #1

Open neenah13 opened 1 month ago

neenah13 commented 1 month ago

Hello, I tried to install using git clone https://github.com/jkimlab/IMAP.git but i received the following error:- Cloning into 'IMAP'... remote: Enumerating objects: 55, done. remote: Counting objects: 100% (3/3), done. remote: Compressing objects: 100% (3/3), done. error: RPC failed; result=18, HTTP code = 200 fatal: The remote end hung up unexpectedly fatal: early EOF fatal: unpack-objects failed

Is there an alternative way to install it? can it be installed via conda?

jkimlab commented 1 month ago

I just checked and it worked on our machine. It may be a network or server problem on your side. Please try it later.

On May 30, 2024, at 6:14 PM, neenah13 @.***> wrote:

Hello, I tried to install using git clone https://github.com/jkimlab/IMAP.git but i received the following error:- Cloning into 'IMAP'... remote: Enumerating objects: 55, done. remote: Counting objects: 100% (3/3), done. remote: Compressing objects: 100% (3/3), done. error: RPC failed; result=18, HTTP code = 200 fatal: The remote end hung up unexpectedly fatal: early EOF fatal: unpack-objects failed

Is there an alternative way to install it? can it be installed via conda?

— Reply to this email directly, view it on GitHub https://github.com/jkimlab/IMAP/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEU6PV4AET557YMJNMCHTELZE3UWHAVCNFSM6AAAAABIQQUZCWVHI2DSMVQWIX3LMV43ASLTON2WKOZSGMZDKMJWGA2TEMA. You are receiving this because you are subscribed to this thread.

neenah13 commented 1 month ago

OMG. Thank you so much for a quick reply. Git clone way wasn't working so i downloaded and unzipped the folder. So far i have run ./build.pl --install and this is what it gives me:-

Unzip kent utilities... Done Unzip SPAdes... Done Unzip SOAPdenovo2 & GapCloser... Done Compile RACA... Done Compile DESCHRAMBLER... Done Compile BWA... Done Compile lastz... Done Compile samtools... Done Compile MaSuRCA... ERROR

How can i make it compile Masurca?

jkimlab commented 1 month ago

Sorry but I don’t know what happened in your machine because it was compiled successfully in mine just before.

You may find the reasons in the IMAP/scripts/thirdparty/masurca.log file. You also need to check the system requirements and Perl library dependency as described in the README file.

On May 30, 2024, at 7:57 PM, neenah13 @.***> wrote:

OMG. Thank you so much for a quick reply. Git clone way wasn't working so i downloaded and unzipped the folder. So far i have run ./build.pl --install and this is what it gives me:-

Unzip kent utilities... Done Unzip SPAdes... Done Unzip SOAPdenovo2 & GapCloser... Done Compile RACA... Done Compile DESCHRAMBLER... Done Compile BWA... Done Compile lastz... Done Compile samtools... Done Compile MaSuRCA... ERROR

How can i make it compile Masurca?

— Reply to this email directly, view it on GitHub https://github.com/jkimlab/IMAP/issues/1#issuecomment-2139298975, or unsubscribe https://github.com/notifications/unsubscribe-auth/AEU6PV46OY7RJR4MLBZVWITZE4AZPAVCNFSM6AAAAABIQQUZCWVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCMZZGI4TQOJXGU. You are receiving this because you commented.