import error about Django

[hanjun98]

Hi, first, Thank you for creating a very robust tool. I have a problem for importing scprint like this.

`ImproperlyConfigured Traceback (most recent call last) Cell In[2], line 1 ----> 1 from scprint import scPrint 2 from scdataloader import Preprocessor, utils 3 from scprint.tasks import GNInfer, Embedder, Denoiser, withknn

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/scprint/init.py:3 1 version = "0.0.1" ----> 3 from .model.model import scPrint 5 # from .data_collator import DataCollator 6 # from .data_sampler import SubsetsBatchSampler 7 # from .trainer import ( (...) 14 # test, 15 # )#

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/scprint/model/init.py:1 ----> 1 from .model import *

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/scprint/model/model.py:23 21 # from .linear_transformer import FastTransformerEncoderWrapper as FastTransformerEncoder 22 from . import loss ---> 23 from .utils import simple_masker 24 from . import utils 25 from .loss import grad_reverse

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/scprint/model/utils.py:19 16 import gc 17 import json ---> 19 from ..tasks import cell_emb as embbed_task 20 from ..tasks import grn as grn_task 21 from ..tasks import denoise as denoise_task

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/scprint/tasks/init.py:1 ----> 1 from .grn import 2 from .cell_emb import 3 from .denoise import *

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/scprint/tasks/grn.py:1 ----> 1 from scdataloader import Preprocessor, Collator 2 from scdataloader.data import SimpleAnnDataset 4 from bengrn.base import train_classifier

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/scdataloader/init.py:1 ----> 1 from .data import Dataset, SimpleAnnDataset 2 from .datamodule import DataModule 3 from .preprocess import Preprocessor

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/scdataloader/data.py:11 9 from torch.utils.data import Dataset as torchDataset 10 from typing import Union, Optional, Literal ---> 11 from scdataloader.mapped import MappedCollection 12 import warnings 14 from anndata import AnnData

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/scdataloader/mapped.py:12 9 import pandas as pd 10 from lamindb_setup.core.upath import UPath ---> 12 from lamindb.core.storage._anndata_accessor import ( 13 ArrayType, 14 ArrayTypes, 15 GroupType, 16 GroupTypes, 17 StorageType, 18 _safer_read_index, 19 registry, 20 ) 22 if TYPE_CHECKING: 23 from lamindb_setup.core.types import UPathStr

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/lamindb/core/init.py:61 1 """Core library. 2 3 Registries: (...) 57 58 """ 60 from lamin_utils._inspect import InspectResult ---> 61 from lnschema_core.models import ( 62 CanValidate, 63 FeatureValue, 64 HasFeatures, 65 HasParams, 66 HasParents, 67 IsVersioned, 68 ParamValue, 69 Record, 70 Registry, 71 TracksRun, 72 TracksUpdates, 73 ) 75 from lamindb._curate import ( 76 AnnDataCurator, 77 CurateLookup, 78 DataFrameCurator, 79 MuDataCurator, 80 ) 81 from lamindb._query_manager import QueryManager

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/lnschema_core/models.py:69 65 _TRACKING_READY: bool | None = None 66 IS_RUN_FROM_IPYTHON = getattr(builtins, "IPYTHON", False) ---> 69 class IsVersioned(models.Model): 70 """Base class for versioned models.""" 72 class Meta:

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/django/db/models/base.py:129, in ModelBase.new(cls, name, bases, attrs, **kwargs) 126 app_label = None 128 # Look for an application configuration to attach the model to. --> 129 app_config = apps.get_containing_app_config(module) 131 if getattr(meta, "app_label", None) is None: 132 if app_config is None:

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/django/apps/registry.py:260, in Apps.get_containing_app_config(self, object_name) 251 def get_containing_app_config(self, object_name): 252 """ 253 Look for an app config containing a given object. 254 (...) 258 Return None if the object isn't in any registered app config. 259 """ --> 260 self.check_apps_ready() 261 candidates = [] 262 for app_config in self.app_configs.values():

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/django/apps/registry.py:137, in Apps.check_apps_ready(self) 132 from django.conf import settings 134 # If "not ready" is due to unconfigured settings, accessing 135 # INSTALLED_APPS raises a more helpful ImproperlyConfigured 136 # exception. --> 137 settings.INSTALLED_APPS 138 raise AppRegistryNotReady("Apps aren't loaded yet.")

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/django/conf/init.py:81, in LazySettings.getattr(self, name) 79 """Return the value of a setting and cache it in self.dict.""" 80 if (_wrapped := self._wrapped) is empty: ---> 81 self._setup(name) 82 _wrapped = self._wrapped 83 val = getattr(_wrapped, name)

File ~/mambaforge/envs/scprint/lib/python3.10/site-packages/django/conf/init.py:61, in LazySettings._setup(self, name) 59 if not settings_module: 60 desc = ("setting %s" % name) if name else "settings" ---> 61 raise ImproperlyConfigured( 62 "Requested %s, but settings are not configured. " 63 "You must either define the environment variable %s " 64 "or call settings.configure() before accessing settings." 65 % (desc, ENVIRONMENT_VARIABLE) 66 ) 68 self._wrapped = Settings(settings_module)

ImproperlyConfigured: Requested setting INSTALLED_APPS, but settings are not configured. You must either define the environment variable DJANGO_SETTINGS_MODULE or call settings.configure() before accessing settings.`

And my enviroment `# packages in environment at /mnt/gmi-l1/_90.User_Data/dhthxkr/mambaforge/envs/scprint: #

Name Version Build Channel

_libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge absl-py 2.1.0 pypi_0 pypi aiobotocore 2.13.2 pypi_0 pypi aiohappyeyeballs 2.3.5 pypi_0 pypi aiohttp 3.10.3 pypi_0 pypi aioitertools 0.11.0 pypi_0 pypi aiosignal 1.3.1 pypi_0 pypi anndata 0.10.8 pypi_0 pypi annotated-types 0.7.0 pypi_0 pypi antlr4-python3-runtime 4.9.3 pypi_0 pypi anyio 4.4.0 pyhd8ed1ab_0 conda-forge appdirs 1.4.4 pypi_0 pypi arboreto 0.1.6 pypi_0 pypi argon2-cffi 23.1.0 pyhd8ed1ab_0 conda-forge argon2-cffi-bindings 21.2.0 py310h2372a71_4 conda-forge array-api-compat 1.8 pypi_0 pypi arrow 1.3.0 pyhd8ed1ab_0 conda-forge asciitree 0.3.3 pypi_0 pypi asgiref 3.8.1 pypi_0 pypi asttokens 2.4.1 pyhd8ed1ab_0 conda-forge async-lru 2.0.4 pyhd8ed1ab_0 conda-forge async-timeout 4.0.3 pypi_0 pypi attridict 0.0.9 pypi_0 pypi attrs 24.2.0 pyh71513ae_0 conda-forge babel 2.14.0 pyhd8ed1ab_0 conda-forge beautifulsoup4 4.12.3 pyha770c72_0 conda-forge bengrn 1.0.2 pypi_0 pypi bio 1.7.1 pypi_0 pypi biomart 0.9.2 pypi_0 pypi bionty 0.48.0 pypi_0 pypi biopython 1.84 pypi_0 pypi biothings-client 0.3.1 pypi_0 pypi black 23.12.1 pypi_0 pypi bleach 6.1.0 pyhd8ed1ab_0 conda-forge bokeh 3.5.1 pypi_0 pypi boltons 24.0.0 pypi_0 pypi botocore 1.34.131 pypi_0 pypi brotli-python 1.1.0 py310hc6cd4ac_1 conda-forge bzip2 1.0.8 h4bc722e_7 conda-forge ca-certificates 2024.7.4 hbcca054_0 conda-forge cached-property 1.5.2 hd8ed1ab_1 conda-forge cached_property 1.5.2 pyha770c72_1 conda-forge cellxgene-census 1.15.0 pypi_0 pypi certifi 2024.7.4 pyhd8ed1ab_0 conda-forge cffi 1.17.0 py310h2fdcea3_0 conda-forge chardet 5.2.0 pypi_0 pypi charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge chex 0.1.86 pypi_0 pypi click 8.1.7 pypi_0 pypi cloudpickle 3.0.0 pypi_0 pypi colourmap 1.1.17 pypi_0 pypi comm 0.2.2 pyhd8ed1ab_0 conda-forge contourpy 1.2.1 pypi_0 pypi coverage 7.6.1 pypi_0 pypi ctxcore 0.2.0 pypi_0 pypi cycler 0.12.1 pypi_0 pypi cytoolz 0.12.3 pypi_0 pypi d3graph 2.5.0 pypi_0 pypi dask 2024.8.0 pypi_0 pypi dask-expr 1.1.10 pypi_0 pypi datazets 0.1.9 pypi_0 pypi debugpy 1.8.5 py310hea249c9_0 conda-forge decorator 5.1.1 pyhd8ed1ab_0 conda-forge decoupler 1.8.0 pypi_0 pypi defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge deprecated 1.2.14 pypi_0 pypi deprecation 2.1.0 pypi_0 pypi dill 0.3.8 pypi_0 pypi distributed 2024.8.0 pypi_0 pypi dj-database-url 2.2.0 pypi_0 pypi django 5.1 pypi_0 pypi docker-pycreds 0.4.0 pypi_0 pypi docrep 0.3.2 pypi_0 pypi docstring-parser 0.16 pypi_0 pypi einops 0.8.0 pypi_0 pypi entrypoints 0.4 pyhd8ed1ab_0 conda-forge exceptiongroup 1.2.2 pyhd8ed1ab_0 conda-forge executing 2.0.1 pyhd8ed1ab_0 conda-forge fair-esm 2.0.0 pypi_0 pypi fasteners 0.19 pypi_0 pypi fastobo 0.12.3 pypi_0 pypi filelock 3.15.4 pypi_0 pypi flake8 6.1.0 pypi_0 pypi fonttools 4.53.1 pypi_0 pypi fqdn 1.5.1 pyhd8ed1ab_0 conda-forge frozendict 2.4.4 pypi_0 pypi frozenlist 1.4.1 pypi_0 pypi fsspec 2024.6.1 pypi_0 pypi gget 0.28.6 pypi_0 pypi ghp-import 2.1.0 pypi_0 pypi gitchangelog 3.0.4 pypi_0 pypi gitdb 4.0.11 pypi_0 pypi gitpython 3.1.43 pypi_0 pypi gotrue 2.6.2 pypi_0 pypi gprofiler-official 1.0.0 pypi_0 pypi grnndata 1.0.1 pypi_0 pypi gseapy 1.1.3 pypi_0 pypi h11 0.14.0 pyhd8ed1ab_0 conda-forge h2 4.1.0 pyhd8ed1ab_0 conda-forge h5py 3.11.0 pypi_0 pypi hdbscan 0.8.38.post1 pypi_0 pypi hpack 4.0.0 pyh9f0ad1d_0 conda-forge httpcore 0.17.3 pypi_0 pypi httpx 0.24.1 pypi_0 pypi huggingface-hub 0.24.5 pypi_0 pypi hydra-core 1.3.2 pypi_0 pypi hyperframe 6.0.1 pyhd8ed1ab_0 conda-forge idna 3.7 pyhd8ed1ab_0 conda-forge igraph 0.11.6 pypi_0 pypi importlib-metadata 8.2.0 pyha770c72_0 conda-forge importlib_metadata 8.2.0 hd8ed1ab_0 conda-forge importlib_resources 6.4.0 pyhd8ed1ab_0 conda-forge inflect 7.3.1 pypi_0 pypi iniconfig 2.0.0 pypi_0 pypi interlap 0.2.7 pypi_0 pypi ipykernel 6.29.5 pyh3099207_0 conda-forge ipython 8.26.0 pyh707e725_0 conda-forge ipywidgets 8.1.3 pyhd8ed1ab_0 conda-forge ismember 1.0.5 pypi_0 pypi isoduration 20.11.0 pyhd8ed1ab_0 conda-forge isort 5.13.2 pypi_0 pypi jax 0.4.31 pypi_0 pypi jaxlib 0.4.31 pypi_0 pypi jedi 0.19.1 pyhd8ed1ab_0 conda-forge jinja2 3.1.4 pyhd8ed1ab_0 conda-forge jmespath 1.0.1 pypi_0 pypi joblib 1.4.2 pypi_0 pypi json5 0.9.25 pyhd8ed1ab_0 conda-forge jsonargparse 4.32.0 pypi_0 pypi jsonpickle 3.2.2 pypi_0 pypi jsonpointer 3.0.0 py310hff52083_0 conda-forge jsonschema 4.23.0 pyhd8ed1ab_0 conda-forge jsonschema-specifications 2023.12.1 pyhd8ed1ab_0 conda-forge jsonschema-with-format-nongpl 4.23.0 hd8ed1ab_0 conda-forge jupyter 1.0.0 pyhd8ed1ab_10 conda-forge jupyter-lsp 2.2.5 pyhd8ed1ab_0 conda-forge jupyter_client 8.6.2 pyhd8ed1ab_0 conda-forge jupyter_console 6.6.3 pyhd8ed1ab_0 conda-forge jupyter_core 5.7.2 py310hff52083_0 conda-forge jupyter_events 0.10.0 pyhd8ed1ab_0 conda-forge jupyter_server 2.14.2 pyhd8ed1ab_0 conda-forge jupyter_server_terminals 0.5.3 pyhd8ed1ab_0 conda-forge jupyterlab 4.2.4 pyhd8ed1ab_0 conda-forge jupyterlab_pygments 0.3.0 pyhd8ed1ab_1 conda-forge jupyterlab_server 2.27.3 pyhd8ed1ab_0 conda-forge jupyterlab_widgets 3.0.11 pyhd8ed1ab_0 conda-forge keopscore 2.2.3 pypi_0 pypi keyutils 1.6.1 h166bdaf_0 conda-forge kiwisolver 1.4.5 pypi_0 pypi krb5 1.21.3 h659f571_0 conda-forge lamin-cli 0.16.0 pypi_0 pypi lamin-utils 0.13.2 pypi_0 pypi lamindb 0.75.1 pypi_0 pypi lamindb-setup 0.76.3 pypi_0 pypi ld_impl_linux-64 2.40 hf3520f5_7 conda-forge legacy-api-wrap 1.4 pypi_0 pypi leidenalg 0.10.2 pypi_0 pypi libedit 3.1.20191231 he28a2e2_2 conda-forge libffi 3.4.2 h7f98852_5 conda-forge libgcc-ng 14.1.0 h77fa898_0 conda-forge libgomp 14.1.0 h77fa898_0 conda-forge libnsl 2.0.1 hd590300_0 conda-forge libsodium 1.0.18 h36c2ea0_1 conda-forge libsqlite 3.46.0 hde9e2c9_0 conda-forge libstdcxx-ng 14.1.0 hc0a3c3a_0 conda-forge libuuid 2.38.1 h0b41bf4_0 conda-forge libzlib 1.3.1 h4ab18f5_1 conda-forge lightning 2.4.0 pypi_0 pypi lightning-utilities 0.11.6 pypi_0 pypi llvmlite 0.43.0 pypi_0 pypi lnschema-core 0.72.2 pypi_0 pypi locket 1.0.0 pypi_0 pypi loompy 3.0.7 pypi_0 pypi louvain 0.8.2 pypi_0 pypi lxml 5.3.0 pypi_0 pypi lz4 4.3.3 pypi_0 pypi markdown 3.6 pypi_0 pypi markdown-it-py 3.0.0 pypi_0 pypi markupsafe 2.0.1 pypi_0 pypi matplotlib 3.9.2 pypi_0 pypi matplotlib-inline 0.1.7 pyhd8ed1ab_0 conda-forge mccabe 0.7.0 pypi_0 pypi mdurl 0.1.2 pypi_0 pypi mergedeep 1.3.4 pypi_0 pypi mistune 3.0.2 pyhd8ed1ab_0 conda-forge mkdocs 1.6.0 pypi_0 pypi mkdocs-get-deps 0.2.0 pypi_0 pypi ml-dtypes 0.4.0 pypi_0 pypi more-itertools 10.4.0 pypi_0 pypi mpmath 1.3.0 pypi_0 pypi msgpack 1.0.8 pypi_0 pypi multidict 6.0.5 pypi_0 pypi multiprocessing-on-dill 3.5.0a4 pypi_0 pypi mygene 3.2.2 pypi_0 pypi mypy 1.11.1 pypi_0 pypi mypy-extensions 1.0.0 pypi_0 pypi mysql-connector-python 8.0.29 pypi_0 pypi natsort 8.4.0 pypi_0 pypi nbclient 0.10.0 pyhd8ed1ab_0 conda-forge nbconvert 7.16.4 hd8ed1ab_1 conda-forge nbconvert-core 7.16.4 pyhd8ed1ab_1 conda-forge nbconvert-pandoc 7.16.4 hd8ed1ab_1 conda-forge nbformat 5.10.4 pyhd8ed1ab_0 conda-forge ncurses 6.5 h59595ed_0 conda-forge nest-asyncio 1.6.0 pyhd8ed1ab_0 conda-forge networkx 3.3 pypi_0 pypi notebook 7.2.1 pyhd8ed1ab_0 conda-forge notebook-shim 0.2.4 pyhd8ed1ab_0 conda-forge numba 0.60.0 pypi_0 pypi numcodecs 0.13.0 pypi_0 pypi numexpr 2.10.1 pypi_0 pypi numpy 1.26.4 pypi_0 pypi numpy-groupies 0.11.2 pypi_0 pypi nvidia-cublas-cu12 12.1.3.1 pypi_0 pypi nvidia-cuda-cupti-cu12 12.1.105 pypi_0 pypi nvidia-cuda-nvrtc-cu12 12.1.105 pypi_0 pypi nvidia-cuda-runtime-cu12 12.1.105 pypi_0 pypi nvidia-cudnn-cu12 8.9.2.26 pypi_0 pypi nvidia-cufft-cu12 11.0.2.54 pypi_0 pypi nvidia-curand-cu12 10.3.2.106 pypi_0 pypi nvidia-cusolver-cu12 11.4.5.107 pypi_0 pypi nvidia-cusparse-cu12 12.1.0.106 pypi_0 pypi nvidia-nccl-cu12 2.19.3 pypi_0 pypi nvidia-nvjitlink-cu12 12.6.20 pypi_0 pypi nvidia-nvtx-cu12 12.1.105 pypi_0 pypi omegaconf 2.3.0 pypi_0 pypi omnipath 1.0.8 pypi_0 pypi openssl 3.3.1 h4bc722e_2 conda-forge opt-einsum 3.3.0 pypi_0 pypi overrides 7.7.0 pyhd8ed1ab_0 conda-forge owlready2 0.46 pypi_0 pypi packaging 24.1 pyhd8ed1ab_0 conda-forge pandas 2.2.2 pypi_0 pypi pandoc 3.3 ha770c72_0 conda-forge pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge parso 0.8.4 pyhd8ed1ab_0 conda-forge partd 1.4.2 pypi_0 pypi pathspec 0.12.1 pypi_0 pypi patsy 0.5.6 pypi_0 pypi pexpect 4.9.0 pyhd8ed1ab_0 conda-forge pickleshare 0.7.5 py_1003 conda-forge pillow 10.4.0 pypi_0 pypi pip 24.2 pyhd8ed1ab_0 conda-forge pkgutil-resolve-name 1.3.10 pyhd8ed1ab_1 conda-forge platformdirs 4.2.2 pyhd8ed1ab_0 conda-forge plottable 0.1.5 pypi_0 pypi pluggy 1.5.0 pypi_0 pypi pooch 1.8.2 pypi_0 pypi postgrest 0.13.2 pypi_0 pypi powerlaw 1.5 pypi_0 pypi prometheus_client 0.20.0 pyhd8ed1ab_0 conda-forge prompt-toolkit 3.0.47 pyha770c72_0 conda-forge prompt_toolkit 3.0.47 hd8ed1ab_0 conda-forge pronto 2.5.5 pypi_0 pypi protobuf 5.27.3 pypi_0 pypi psutil 6.0.0 py310hc51659f_0 conda-forge psycopg2-binary 2.9.9 pypi_0 pypi ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge pure_eval 0.2.3 pyhd8ed1ab_0 conda-forge pyarrow 17.0.0 pypi_0 pypi pyarrow-hotfix 0.6 pypi_0 pypi pybind11 2.13.4 pypi_0 pypi pycodestyle 2.11.1 pypi_0 pypi pycparser 2.22 pyhd8ed1ab_0 conda-forge pydantic 2.8.2 pypi_0 pypi pydantic-core 2.20.1 pypi_0 pypi pydantic-settings 2.4.0 pypi_0 pypi pydot 3.0.1 pypi_0 pypi pyflakes 3.1.0 pypi_0 pypi pygments 2.18.0 pyhd8ed1ab_0 conda-forge pykeops 2.2.3 pypi_0 pypi pynndescent 0.5.13 pypi_0 pypi pyparsing 3.1.2 pypi_0 pypi pyscenic 0.12.1 pypi_0 pypi pysocks 1.7.1 pyha2e5f31_6 conda-forge pytest 7.4.4 pypi_0 pypi pytest-cov 4.1.0 pypi_0 pypi python 3.10.0 h543edf9_3_cpython conda-forge python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge python-dotenv 1.0.1 pypi_0 pypi python-fastjsonschema 2.20.0 pyhd8ed1ab_0 conda-forge python-graphviz 0.20.3 pypi_0 pypi python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge python-louvain 0.16 pypi_0 pypi python_abi 3.10 4_cp310 conda-forge pytorch-lightning 2.4.0 pypi_0 pypi pytz 2024.1 pyhd8ed1ab_0 conda-forge pyvis 0.3.2 pypi_0 pypi pyyaml 6.0.1 pypi_0 pypi pyyaml-env-tag 0.1 pypi_0 pypi pyzmq 26.1.0 py310h7d2b5bf_0 conda-forge qtconsole-base 5.5.2 pyha770c72_0 conda-forge qtpy 2.4.1 pyhd8ed1ab_0 conda-forge rapidfuzz 3.9.6 pypi_0 pypi readline 8.2 h8228510_1 conda-forge realtime 1.0.6 pypi_0 pypi referencing 0.35.1 pyhd8ed1ab_0 conda-forge requests 2.32.3 pyhd8ed1ab_0 conda-forge rfc3339-validator 0.1.4 pyhd8ed1ab_0 conda-forge rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge rich 13.7.1 pypi_0 pypi rich-click 1.8.3 pypi_0 pypi rpds-py 0.20.0 py310h42e942d_0 conda-forge s3fs 2024.6.1 pypi_0 pypi scanpy 1.10.2 pypi_0 pypi scdataloader 1.0.5 pypi_0 pypi scib 1.1.5 pypi_0 pypi scib-metrics 0.5.1 pypi_0 pypi scikit-learn 1.5.1 pypi_0 pypi scikit-misc 0.5.1 pypi_0 pypi scipy 1.12.0 pypi_0 pypi scprint 1.0.15 pypi_0 pypi seaborn 0.13.2 pypi_0 pypi send2trash 1.8.3 pyh0d859eb_0 conda-forge sentry-sdk 2.13.0 pypi_0 pypi session-info 1.0.0 pypi_0 pypi setproctitle 1.3.3 pypi_0 pypi setuptools 72.1.0 pyhd8ed1ab_0 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge smmap 5.0.1 pypi_0 pypi sniffio 1.3.1 pyhd8ed1ab_0 conda-forge somacore 1.0.11 pypi_0 pypi sortedcontainers 2.4.0 pypi_0 pypi soupsieve 2.5 pyhd8ed1ab_1 conda-forge sqlite 3.46.0 h6d4b2fc_0 conda-forge sqlparse 0.5.1 pypi_0 pypi stack_data 0.6.2 pyhd8ed1ab_0 conda-forge statsmodels 0.14.2 pypi_0 pypi stdlib-list 0.10.0 pypi_0 pypi storage3 0.7.7 pypi_0 pypi strenum 0.4.15 pypi_0 pypi supabase 2.2.1 pypi_0 pypi supafunc 0.3.3 pypi_0 pypi sympy 1.13.2 pypi_0 pypi tblib 3.0.0 pypi_0 pypi tensorboardx 2.6.2.2 pypi_0 pypi tensorly 0.8.1 pypi_0 pypi terminado 0.18.1 pyh0d859eb_0 conda-forge texttable 1.7.0 pypi_0 pypi threadpoolctl 3.5.0 pypi_0 pypi tiledb 0.29.1 pypi_0 pypi tiledbsoma 1.11.4 pypi_0 pypi tinycss2 1.3.0 pyhd8ed1ab_0 conda-forge tk 8.6.13 noxft_h4845f30_101 conda-forge tomli 2.0.1 pyhd8ed1ab_0 conda-forge toolz 0.12.1 pypi_0 pypi torch 2.2.0 pypi_0 pypi torchaudio 2.2.0 pypi_0 pypi torchdata 0.7.1 pypi_0 pypi torchmetrics 1.4.1 pypi_0 pypi torchtext 0.17.0 pypi_0 pypi torchvision 0.17.0 pypi_0 pypi tornado 6.4.1 py310hc51659f_0 conda-forge tqdm 4.66.5 pypi_0 pypi traitlets 5.14.3 pyhd8ed1ab_0 conda-forge triton 2.2.0 pypi_0 pypi typeguard 4.3.0 pypi_0 pypi types-python-dateutil 2.9.0.20240316 pyhd8ed1ab_0 conda-forge typeshed-client 2.7.0 pypi_0 pypi typing-extensions 4.12.2 hd8ed1ab_0 conda-forge typing_extensions 4.12.2 pyha770c72_0 conda-forge typing_utils 0.1.0 pyhd8ed1ab_0 conda-forge tzdata 2024.1 pypi_0 pypi umap-learn 0.5.6 pypi_0 pypi universal-pathlib 0.2.2 pypi_0 pypi uri-template 1.3.0 pyhd8ed1ab_0 conda-forge urllib3 2.2.2 pyhd8ed1ab_1 conda-forge wandb 0.17.6 pypi_0 pypi wandb-core 0.17.0b11 pypi_0 pypi watchdog 4.0.2 pypi_0 pypi wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge webcolors 24.8.0 pyhd8ed1ab_0 conda-forge webencodings 0.5.1 pyhd8ed1ab_2 conda-forge websocket-client 1.8.0 pyhd8ed1ab_0 conda-forge websockets 12.0 pypi_0 pypi wheel 0.44.0 pyhd8ed1ab_0 conda-forge widgetsnbextension 4.0.11 pyhd8ed1ab_0 conda-forge wrapt 1.16.0 pypi_0 pypi xyzservices 2024.6.0 pypi_0 pypi xz 5.2.6 h166bdaf_0 conda-forge yaml 0.2.5 h7f98852_2 conda-forge yarl 1.9.4 pypi_0 pypi zarr 2.18.2 pypi_0 pypi zeromq 4.3.5 h75354e8_4 conda-forge zict 3.0.0 pypi_0 pypi zipp 3.20.0 pyhd8ed1ab_0 conda-forge zstandard 0.23.0 py310h64cae3c_0 conda-forge zstd 1.5.6 ha6fb4c9_0 conda-forge`

If there is any way to solve this problem, could you let me know?

Thank you!🙏

[jkobject]

Hey! Sorry for the issue,

This seems like a lamindb issue. Did you create a lamindb account and initialized it properly?

Best,

[hanjun98]

Thank you for replying, so faster! I didn't think that lamindb is essential for scprint. Following your advice, I can resolve this problem! Thank you!!

[jkobject]

No worries. It is needed for now to get access to all the ontologies of genes, cell types etc..

[kavithakrishna1]

Hi, I was having the same error. I have now created a lamindb account and connected to my environment by running: lamin login <email> --key <api_key> (with obviously my email and API_key) And it gave me the successful "logged in with handle ..." message. Is there anything else I need to set up?