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jlab-code / MethylStar

A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
GNU General Public License v3.0
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Unable to install MethylStar #19

Open AST87 opened 2 years ago

AST87 commented 2 years ago

Hi,

There seems to be a problem with the docker image, I am unable to download MethylStar:

wget www.jlabdata.org/methylstar.tar.gz --2022-08-31 14:09:11-- http://www.jlabdata.org/methylstar.tar.gz Resolving www.jlabdata.org (www.jlabdata.org)... 129.187.153.217 Connecting to www.jlabdata.org (www.jlabdata.org)|129.187.153.217|:80... failed: Connection timed out. Retrying.

While trying to install through git clone, I am getting the following error:

$ python2 run.py cp: cannot create regular file '/home/': Not a directory chmod: cannot access '/home/ins_parallel.sh': No such file or directory sh: 0: cannot open /home/ins_parallel.sh: No such file Traceback (most recent call last): File "run.py", line 35, in os.remove('/home/' + user + '/ins_parallel.sh') OSError: [Errno 2] No such file or directory: '/home/ins_parallel.sh'

Could you please help me with this?

paulicm-UCD commented 8 months ago

Following - any updated docker image link? Thanks.