Genome not found

[gherrgo]

Hello,

I have properly formatted all of the parameters necessary for running the program (see below), but somehow am still getting the error message: ./src/bash/preparing.sh: 5: ./src/bash/tmp.conf: genome/: not found

Any ideas on why this is happening? My ref genome is hg38 formatted as a .fa file from UCSC.

============================================================ Here is summary of configuration parameters:

• RAW files location: /media/grayson/data1/grayson/WGBS
• Number and Size of the data-set: 64 Files and Total size: 566.0 Gigabyte
• The directory of results: /
• Genome type: Human
• Genome folder location: /media/grayson/data1/grayson/Reference genome/ -- Genome Reference name: hg38.fa
• Paired End: Enabled
• Trimmomatic location: /bin/Trimmomatic-Src-0.39/trimmomatic-0.39 -- JAVA path: /usr/bin/java -- ILLUMINACLIP: /bin/Trimmomatic-Src-0.39/trimmomatic-0.39/adapters/TruSeq3-PE.fa:1:30:9 -- LEADING: 20 -- TRAILING: 20 -- SLIDINGWINDOW: 4:20 -- MINLEN: 36 -- Number of Threads: 8
• QC-Fastq path: /bin/fastqc_v0.11.8/FastQC/fastqc
• Bismark parameters: /bin/Bismark-0.19.1 -- scBS-Seq (--pbat)? Disabled -- Nucleotide status: false -- Number of Parallel: 8 Threads. -- Buffer size: 40 Gigabyte. -- Samtools Path: /bin/samtools -- Bedtools Path: /usr/bin/bedtools -- Intermediate for MethExtractor: Disabled
• Methylation extraction parameters( Only for quick run) -- Minimum read coverage: 1
• Methimpute Part: -- Methimpute Intermediate : Enabled -- Methimpute probability(Intermediate): constrained -- Methimpute Fit reports: Disabled -- Methimpute Enrichment plots: Disabled -- Methimpute Full report: Disabled -- Methimpute Context: All
• Parallel mode is: Disabled
• E-mail notification: Disabled
• MethylStar version: 1.1.1 Thanks!