Setting --gpu_device 1 yields the following error:
Loading images.
Performing registration.
Traceback (most recent call last):
File "/home/peter/anaconda3/bin/pathflow-mixmatch", line 8, in <module>
sys.exit(main())
File "/home/peter/anaconda3/lib/python3.8/site-packages/pathflow_mixmatch/cli.py", line 577, in main
fire.Fire(Commands)
File "/home/peter/anaconda3/lib/python3.8/site-packages/fire/core.py", line 141, in Fire
component_trace = _Fire(component, args, parsed_flag_args, context, name)
File "/home/peter/anaconda3/lib/python3.8/site-packages/fire/core.py", line 466, in _Fire
component, remaining_args = _CallAndUpdateTrace(
File "/home/peter/anaconda3/lib/python3.8/site-packages/fire/core.py", line 681, in _CallAndUpdateTrace
component = fn(*varargs, **kwargs)
File "/home/peter/anaconda3/lib/python3.8/site-packages/pathflow_mixmatch/cli.py", line 549, in register_images
register_images_(im1_fname=im1,
File "/home/peter/anaconda3/lib/python3.8/site-packages/pathflow_mixmatch/cli.py", line 476, in register_images_
new_img=displace_image(im2,affine_register(im1, im2, gpu_device=gpu_device, lr=lr, loss_fn=loss_fn, transform_type=transform_type, iterations=iterations, opt_cm=opt_cm, sigma=sigma, order=order, pyramid=pyramid,interpolation=interpolation)[0],gpu_device=gpu_device) # new tri, output he as well
File "/home/peter/anaconda3/lib/python3.8/site-packages/pathflow_mixmatch/cli.py", line 103, in affine_register
fixed_image = al.utils.image.create_tensor_image_from_itk_image(sitk.GetImageFromArray(cv2.cvtColor(im1, cv2.COLOR_BGR2GRAY)), dtype=th.float32, device=device)#al.read_image_as_tensor("./practice_reg/1.png", dtype=dtype, device=device)#th.tensor(img1,device='cuda',dtype=dtype)#
File "/home/peter/anaconda3/lib/python3.8/site-packages/airlab/utils/image.py", line 308, in create_tensor_image_from_itk_image
tensor_image = th.tensor(np_image, dtype=dtype, device=device).unsqueeze(0).unsqueeze(0)
RuntimeError: CUDA error: invalid device ordinal
Currently running on pytorch version 1.9
I can see the error is in airlab. If you want i can move the issue to that github repo -- however it seems to not be maintained
Hi.
Setting --gpu_device 1 yields the following error:
Currently running on pytorch version 1.9
I can see the error is in airlab. If you want i can move the issue to that github repo -- however it seems to not be maintained