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jlevy44
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PathFlowAI
A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology
https://jlevy44.github.io/PathFlowAI/
MIT License
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Bump certifi from 2019.9.11 to 2022.12.7 in /docker
#47
dependabot[bot]
opened
1 year ago
0
Bump pillow from 6.2.1 to 9.3.0 in /docker
#46
dependabot[bot]
opened
1 year ago
0
Bump joblib from 0.14.0 to 1.2.0 in /docker
#45
dependabot[bot]
opened
1 year ago
0
Bump distributed from 2.6.0 to 2021.10.0 in /docker
#44
dependabot[bot]
opened
1 year ago
0
Bump numpy from 1.17.3 to 1.22.0 in /docker
#43
dependabot[bot]
opened
2 years ago
0
Bump pillow from 6.2.1 to 9.0.1 in /docker
#42
dependabot[bot]
closed
1 year ago
1
Bump pillow from 6.2.1 to 9.0.0 in /docker
#41
dependabot[bot]
closed
2 years ago
1
Bump dask from 2.6.0 to 2021.10.0 in /docker
#40
dependabot[bot]
opened
2 years ago
0
Fix errors in model_training.py
#39
sagarg22
opened
2 years ago
0
Bump opencv-python from 4.1.1.26 to 4.2.0.32 in /docker
#38
dependabot[bot]
opened
2 years ago
0
Bump opencv-python-headless from 4.1.1.26 to 4.2.0.32 in /docker
#37
dependabot[bot]
opened
2 years ago
0
Bump pillow from 6.2.1 to 8.3.2 in /docker
#36
dependabot[bot]
closed
2 years ago
1
pretrained model weights
#35
luciantunez
opened
3 years ago
0
Bump pillow from 6.2.1 to 8.2.0 in /docker
#34
dependabot[bot]
closed
2 years ago
1
Bump urllib3 from 1.25.6 to 1.26.5 in /docker
#33
dependabot[bot]
opened
3 years ago
0
Bump urllib3 from 1.25.6 to 1.25.8 in /docker
#32
dependabot[bot]
closed
3 years ago
1
Bump pillow from 6.2.1 to 8.1.1 in /docker
#31
dependabot[bot]
closed
3 years ago
1
Bump pillow from 6.2.1 to 7.1.0 in /docker
#30
dependabot[bot]
closed
3 years ago
1
Dask_image issue/bug
#28
asmagen
closed
4 years ago
1
Issues with segmentation training
#27
asmagen
closed
4 years ago
12
Issue with Transposing Dask Array and Application of Annotations
#26
jlevy44
closed
4 years ago
9
No such command 'train_model'
#25
asmagen
closed
4 years ago
3
Preprocessing status and outputs
#24
asmagen
closed
4 years ago
22
Some images without some classes in segmentation workflow
#23
asmagen
closed
4 years ago
1
Generating .npy input format for segmentation with a multi-channel tif
#22
asmagen
closed
4 years ago
1
Preprocess Additions
#21
jlevy44
opened
4 years ago
0
Sparse vs dense annotation
#20
asmagen
closed
4 years ago
6
Testing example
#19
asmagen
opened
4 years ago
1
Dask DataLoader Speed (2.0 feature)
#18
jlevy44
opened
4 years ago
2
Add checks for corrupt Zarr files
#17
jlevy44
opened
4 years ago
0
Preprocessing Color Channel Detection
#16
jlevy44
opened
4 years ago
0
Adding custom dictionary input for annotations per slide
#15
jlevy44
closed
4 years ago
1
Registration
#14
asmagen
closed
4 years ago
2
Add Basic Front End Components to dockerfile and optional module
#13
jlevy44
opened
4 years ago
4
Bump psutil from 5.6.3 to 5.6.6 in /docker
#12
dependabot[bot]
closed
4 years ago
0
Dockerfile
#11
jlevy44
closed
4 years ago
1
Utilize ncvis in addition to UMAP
#10
jlevy44
opened
4 years ago
1
Interactive slide viewing support
#9
jlevy44
closed
4 years ago
1
Update Click, add .gitignore, format code, and use Poetry
#8
sumanthratna
opened
4 years ago
6
Merging a few changes
#7
jlevy44
closed
4 years ago
0
Fix svs2dask_array
#6
sumanthratna
closed
4 years ago
0
Customize optimization level
#5
jlevy44
closed
4 years ago
1
Docker install
#4
jlevy44
closed
4 years ago
2
User customizable transformations
#3
jlevy44
closed
4 years ago
1
Hyperparameter search
#2
jlevy44
opened
4 years ago
2
Set pin_memory=True
#1
jlevy44
closed
4 years ago
2