yingyin2019
commented
7 months ago I also try to install it using source file, still get the same error ,
install.packages("E:/uwot_0.2.2.tar.gz", repos = NULL, type = "source")
- installing source package 'uwot' ... package 'uwot' successfully unpacked and MD5 sums checked using non-staged installation ** libs
*** arch - i386
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.2/include" -DNDEBUG -I../inst/include/ -I'C:/Program Files/R/R-4.1.2/library/dqrng/include' -I'C:/Program Files/R/R-4.1.2/library/Rcpp/include' -I'C:/Program Files/R/R-4.1.2/library/RcppAnnoy/include' -I'C:/Program Files/R/R-4.1.2/library/RcppProgress/include' -DRCPP_NO_RTTI -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.2/include" -DNDEBUG -I../inst/include/ -I'C:/Program Files/R/R-4.1.2/library/dqrng/include' -I'C:/Program Files/R/R-4.1.2/library/Rcpp/include' -I'C:/Program Files/R/R-4.1.2/library/RcppAnnoy/include' -I'C:/Program Files/R/R-4.1.2/library/RcppProgress/include' -DRCPP_NO_RTTI -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c connected_components.cpp -o connected_components.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.2/include" -DNDEBUG -I../inst/include/ -I'C:/Program Files/R/R-4.1.2/library/dqrng/include' -I'C:/Program Files/R/R-4.1.2/library/Rcpp/include' -I'C:/Program Files/R/R-4.1.2/library/RcppAnnoy/include' -I'C:/Program Files/R/R-4.1.2/library/RcppProgress/include' -DRCPP_NO_RTTI -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nn_parallel.cpp -o nn_parallel.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.2/include" -DNDEBUG -I../inst/include/ -I'C:/Program Files/R/R-4.1.2/library/dqrng/include' -I'C:/Program Files/R/R-4.1.2/library/Rcpp/include' -I'C:/Program Files/R/R-4.1.2/library/RcppAnnoy/include' -I'C:/Program Files/R/R-4.1.2/library/RcppProgress/include' -DRCPP_NO_RTTI -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c perplexity.cpp -o perplexity.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.2/include" -DNDEBUG -I../inst/include/ -I'C:/Program Files/R/R-4.1.2/library/dqrng/include' -I'C:/Program Files/R/R-4.1.2/library/Rcpp/include' -I'C:/Program Files/R/R-4.1.2/library/RcppAnnoy/include' -I'C:/Program Files/R/R-4.1.2/library/RcppProgress/include' -DRCPP_NO_RTTI -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c r_uwot.cpp -o r_uwot.o
r_uwot.cpp: In member function 'std::unique_ptr~~
r_uwot.cpp:137:19: note: 'std::make_unique' is defined in header '
r_uwot.cpp:137:19:
return std::make_unique~~
r_uwot.cpp:137:41: error: expected primary-expression before '>' token
return std::make_unique~~
r_uwot.cpp:145:19: note: 'std::make_unique' is defined in header '
- removing 'C:/Program Files/R/R-4.1.2/library/uwot' Warning in install.packages : installation of package ‘E:/uwot_0.2.2.tar.gz’ had non-zero exit status
jlmelville
Hi, I'm trying to install uwot on my PC R-4.1.2. error message as following
1: All
2: CRAN packages only
3: None
4: Rcpp (1.0.11.6 -> 1.0.12) [CRAN]
Enter one or more numbers, or an empty line to skip updates: 3 -- R CMD build ----------------------------------------------------------------------------------------------------- v checking for file 'C:\Users\Administrator\AppData\Local\Temp\Rtmp0CF9cz\remotes6ed0454f3667\jlmelville-uwot-cd38605/DESCRIPTION' (437ms)
installing the package to process help pages
installing source package 'uwot' ... using non-staged installation libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.2/include" -DNDEBUG -I../inst/include/ -I'C:/Program Files/R/R-4.1.2/library/dqrng/include' -I'C:/Program Files/R/R-4.1.2/library/Rcpp/include' -I'C:/Program Files/R/R-4.1.2/library/RcppAnnoy/include' -I'C:/Program Files/R/R-4.1.2/library/RcppProgress/include' -DRCPP_NO_RTTI -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -Wall -pedantic -fdiagnostics-color=always -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.2/include" -DNDEBUG -I../inst/include/ -I'C:/Program Files/R/R-4.1.2/library/dqrng/include' -I'C:/Program Files/R/R-4.1.2/library/Rcpp/include' -I'C:/Program Files/R/R-4.1.2/library/RcppAnnoy/include' -I'C:/Program Files/R/R-4.1.2/library/RcppProgress/include' -DRCPP_NO_RTTI -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -Wall -pedantic -fdiagnostics-color=always -c connected_components.cpp -o connected_components.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.2/include" -DNDEBUG -I../inst/include/ -I'C:/Program Files/R/R-4.1.2/library/dqrng/include' -I'C:/Program Files/R/R-4.1.2/library/Rcpp/include' -I'C:/Program Files/R/R-4.1.2/library/RcppAnnoy/include' -I'C:/Program Files/R/R-4.1.2/library/RcppProgress/include' -DRCPP_NO_RTTI -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -Wall -pedantic -fdiagnostics-color=always -c nn_parallel.cpp -o nn_parallel.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.2/include" -DNDEBUG -I../inst/include/ -I'C:/Program Files/R/R-4.1.2/library/dqrng/include' -I'C:/Program Files/R/R-4.1.2/library/Rcpp/include' -I'C:/Program Files/R/R-4.1.2/library/RcppAnnoy/include' -I'C:/Program Files/R/R-4.1.2/library/RcppProgress/include' -DRCPP_NO_RTTI -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -Wall -pedantic -fdiagnostics-color=always -c perplexity.cpp -o perplexity.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/PROGRA~1/R/R-41~1.2/include" -DNDEBUG -I../inst/include/ -I'C:/Program Files/R/R-4.1.2/library/dqrng/include' -I'C:/Program Files/R/R-4.1.2/library/Rcpp/include' -I'C:/Program Files/R/R-4.1.2/library/RcppAnnoy/include' -I'C:/Program Files/R/R-4.1.2/library/RcppProgress/include' -DRCPP_NO_RTTI -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -Wall -pedantic -fdiagnostics-color=always -c r_uwot.cpp -o r_uwot.o r_uwot.cpp:n member function 'std::unique_ptr UmapFactory::create_optimizer(Rcpp::List)
r_uwot.cpp:137:19:error: make_uniqueis not a member of 'std
return std::make_unique::Adam>(alpha, beta1, beta2, eps,
^ did you forget to '#include
r_uwot.cpp:31:1:
+#include
~~r_uwot.cpp:137:19:note: std::make_uniqueis defined in header 'r_uwot.cpp:137:19: return std::make_unique::Adam>(alpha, beta1, beta2, eps, ^a, beta1, beta2, eps,
^
r_uwot.cpp:137:50:warning: operand of comma operator has no effect [-Wunused-value
return std::make_unique(alpha, beta1a2, eps,
^~~~~
r_uwot.cpp:137:57:warning: operand of comma operator has no effect [-Wunused-value
return std::make_unique(alpha, beta1, beta2,
^~~~~
r_uwot.cpp:137:64:warning: operand of comma operator has no effect [-Wunused-value
return std::make_unique(alpha, beta1, beta2, eps
^~~
r_uwot.cpp:138:63:warning: operand of comma operator has no effect [-Wunused-value
head_embedding.size()
^
r_uwot.cpp:145:19:error: make_uniqueis not a member of 'std
return std::make_unique::Sgd>(alpha);
^ did you forget to '#include
r_uwot.cpp:145:40:error: pected primary-expression before '>en
return std::make_uniquea);
^
make: *** [C:/PROGRA~1/R/R-41~1.2/etc/x64/Makeconf:245: r_uwot.o] Error 1
ERROR: compilation failed for package 'uwot'
~~r_uwot.cpp:137:41:error: pected primary-expression before '>en return std::make_unique~~r_uwot.cpp:145:19:note: std::make_uniqueis defined in header 'removing 'C:/Users/ADMINI~1/AppData/Local/Temp/Rtmpsxxuq2/Rinst24e027b53b9c/uwot'
ERROR: package installation failed Error: Failed to install 'uwot' from GitHub: ! System command 'Rcmd.exe' failed
i hope someone may kindly help with my issue. regards, Ying