how to generate a file in .gcsa2 format and in .graph format?

jltsiren / gcsa2

BWT-based index for graphs

MIT License

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Open xd-hbj opened 3 years ago

xd-hbj commented 3 years ago

Hello, how can I use the .fa file and the .vcf file to generate a .gcsa2 format or a .graph file? thanks a lot!

jltsiren commented 3 years ago

The only way I'm aware of is using vg. You first build a graph with vg construct and then extract kmers with vg kmers.

xd-hbj commented 3 years ago

thanks!