TODO - Githubissues

jluebeck / FaNDOM

Fast Nested Distance aligner for Optical Maps

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TODO #1

Open jluebeck opened 4 years ago

jluebeck commented 4 years ago

[x] Implement XMAP output
[x] Add a -h option to print FaNDOM args and description
[x] Rename threshold argument to be more descriptive
[x] Re-enable SV mode from unmerged codebase
[x] Add fasta to OM reference generation script
[ ] Port the E-value calculation from SegAligner to FANDOM.