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jluebeck / FaNDOM

Fast Nested Distance aligner for Optical Maps
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Splitting step limit #5

Closed ebioman closed 2 years ago

ebioman commented 2 years ago

Hello I would have a question concerning the individual wrapper which first splits the BNX and then does the alignments. Is there a specific reason in split.py why it is chunked hard-coded into 500000 elements ? I would like to split it even further to distribute it over the cluster and was wondering whether that is later hard-coded and would cause problems ?

ebioman commented 2 years ago

Update: I tried with 50'000 elements instead and it worked well