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jluethi / napari-feature-visualization

Visualizing feature measurements on label images in napari
BSD 3-Clause "New" or "Revised" License
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Adding a classifier widget #10

Closed jluethi closed 3 years ago

jluethi commented 3 years ago

This pull requests adds a classifier widget that can be used to classify label objects based on data in csv files.

It's an alpha state of the widget, but already fairly useful for the basic use-cases.

I also refactored the filenames and separated the functions providing the widgets to napari into their own files to allow for multiple different widgets of the same type to be provided. @haesleinhuepf This therefore involved modifying _regionsprops.py file and moving some functionality to functionwidgets.py. It shouldn't change anything in the actual behavior of the plugin though. Let me know if you're ok with those changes.

Also thanks to @MaksHess for developing a prototype for the classifier functionality in napari and writing the basis for the Classifier class.

codecov-commenter commented 3 years ago

Codecov Report

Merging #10 (ea77493) into master (ed90579) will decrease coverage by 14.52%. The diff coverage is 35.23%.

Impacted file tree graph

@@             Coverage Diff             @@
##           master      #10       +/-   ##
===========================================
- Coverage   45.67%   31.15%   -14.53%     
===========================================
  Files           4        9        +5     
  Lines         162      398      +236     
===========================================
+ Hits           74      124       +50     
- Misses         88      274      +186
Impacted Files Coverage Δ
napari_feature_visualization/__init__.py 66.66% <ø> (ø)
napari_feature_visualization/_regionprops.py 17.85% <ø> (-6.68%) :arrow_down:
napari_feature_visualization/classifier_widgets.py 15.38% <15.38%> (ø)
napari_feature_visualization/classifier.py 29.26% <29.26%> (ø)
napari_feature_visualization/functionwidgets.py 80.00% <80.00%> (ø)
napari_feature_visualization/dockwidgets.py 83.33% <83.33%> (ø)
napari_feature_visualization/utils.py 97.72% <97.72%> (ø)
napari_feature_visualization/feature_vis.py 16.98% <100.00%> (-37.02%) :arrow_down:
... and 5 more

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