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jlw-ecoevo / gRodon

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The fasta file for metagenome I should choose #5

Closed xuanji2017 closed 1 year ago

xuanji2017 commented 2 years ago

Hi I am really interested in your R package gRodon. I am checking the potential to use it in metagenomics data. In metagenomic mode, should I use MAGs as genome fasta input? Thanks a lot!

Best,

jlw-ecoevo commented 2 years ago

You can use either MAGs or assembled metagenomes - although be sure to read the doumentation as the settings you should use for each and their interpretation are different