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jmbreda / Sanity

Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
GNU General Public License v3.0
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segfault if >275k cells #1

Closed WandrilleD closed 4 years ago

WandrilleD commented 4 years ago

Hi, first off, thank you for this useful and easy to use software.

I was testing it out on some data and I found out that whenever the number of cells was above something like 275k cells the allocation on line 59 of calc_true_variation_parallel_prior_mu_sigma.cpp would result in a segfault.

cheers.

jmbreda commented 4 years ago

Hi,

Thank you for pointing this out. This memory allocation issue should be fixed now, let me know if it works.

Best.