jmcbroome / auto-pango-designation

Repository for automated flagging of new lineages for pango designation.
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530 BF.7 samples in Germany #161

Closed jmcbroome closed 1 year ago

jmcbroome commented 2 years ago

BF.7.0 is a proposed sublineage of BF.7 that includes 530 samples.

It was identified from the tree file gisaidAndPublic.2022-10-11.proposed.pb as the descendents of node_2060226.

The earliest dated sample was found on 2021-02-26.

The latest dated sample was found on 2022-10-04.

It is found in 32 countries, most commonly Germany where 27.00% of its samples were sequenced.

BF.7.0 has a Bloom Lab escape score of 0.37, unchanged from the parent lineage.

Full mutational path from the ancestral lineage to the proposed sublineage: G26109T>A2692T>G4124T>C15540T>T4124G

Full amino acid change path from the ancestral lineage to the proposed sublineage: ORF3a:E239D>>ORF1ab:V1287L>>ORF1ab:L1287V

NOTE: The following links search by genotype and parent lineage; they may additionally highlight samples outside of the proposed clade that convergently evolved the same mutations or that were added after this lineage was inferred, or not display or highlight samples which reverted some of the key changes or were removed after this lineage was inferred. They may also take a moment to complete the search on loading.

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The following samples are included in this proposal: Belgium/rega-45150/2022|EPI_ISL_14733182|2022-08-17 France/BFC-HMN-22092190094/2022|EPI_ISL_15115398|2022-09-12 Germany/BB-RKI-I-961504/2022|EPI_ISL_14697161|2022-08-22 Netherlands/GE-RIVM-110511/2022|EPI_ISL_14774100|2022-08-18 Germany/BB-RKI-I-990878/2022|EPI_ISL_15265894|2022-09-23 England/PHEC-YYGU3XH/2022|2022-08-05 Switzerland/BE-ETHZ-38004414/2022|OX345840.1|2022-09-21 Switzerland/ZH-ETHZ-38004219/2022|OX342363.1|2022-09-12 Germany/NW-HHU-31121/2022|EPI_ISL_14620568|2022-08-12 Germany/MV-RKI-I-964415/2022|EPI_ISL_14877540|2022-08-18 Germany/NW-RKI-I-973900/2022|EPI_ISL_15129865|2022-09-06 England/QEUH-32588BD4/2022|2022-09-27 USA/NC-CORVASEQ-UNC-8098/2022|EPI_ISL_15196203|2022-09-21 Slovakia/BA_22_00038191/2022|EPI_ISL_15040214|2022-08-30 Croatia/42647/2022|EPI_ISL_15036376|2022-08-31 As well as 515 additional samples.