jmcbroome / auto-pango-designation

Repository for automated flagging of new lineages for pango designation.
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New Lineages Update: 6 new lineages active through 2023-02-15 #192

Closed jmcbroome closed 1 year ago

jmcbroome commented 1 year ago
Lineage Name Parent Lineage Size Exponential Growth Coefficient CI Earliest Appearance Latest Appearance Regions Nucleotide Changes View On Cov-Spectrum View On Taxonium (Public Samples Only) Download Open Sequence FASTA EPI ISLs Amino Acid Changes Nucleotide Reversions
XBB.1.9.2.1 XBB.1.9.2 111 [0.4695966 0.74346117] 2023-01-02 2023-02-08 Austria, Australia, and Germany C28928T,G23401T View On Cov-Spectrum View On Taxonium (Public Samples Only) No Data Available Get EPI ISLs S:Q613H,N:L219F No Reversions
XAY.2.3 XAY.2 82 [0.28536045 0.43750411] 2022-11-25 2023-02-08 Denmark C657T,A22034G View On Cov-Spectrum View On Taxonium (Public Samples Only) No Data Available Get EPI ISLs ORF1ab:A131V,S:R158G No Reversions
XBK.1 XBK 180 [0.2836097 0.38917593] 2022-07-27 2023-02-08 Slovenia, Germany, and Italy C25046T View On Cov-Spectrum View On Taxonium (Public Samples Only) Download Example Sequence FASTA (LAPIS) Get EPI ISLs S:P1162S No Reversions
XBB.1.15 XBB.1 3385 [0.16005211 0.17940156] 2022-02-16 2023-02-08 USA, Guatemala, and Mexico C1884T,G27915T View On Cov-Spectrum View On Taxonium (Public Samples Only) Download Example Sequence FASTA (LAPIS) Get EPI ISLs ORF1ab:A540V,ORF8:G8* No Reversions
XBB.1.9.1.1 XBB.1.9.1 73 [-0.06436579 0.38125766] 2023-01-02 2023-02-08 Germany, USA, and France G16741T View On Cov-Spectrum View On Taxonium (Public Samples Only) Download Example Sequence FASTA (LAPIS) Get EPI ISLs ORF1ab:V5493F No Reversions
XBL.1 XBL 12 [-0.55451554 0.98352821] 2023-01-29 2023-02-08 Singapore G14035A,A1393G View On Cov-Spectrum View On Taxonium (Public Samples Only) No Data Available Get EPI ISLs ORF1ab:A4591T No Reversions