jmcbroome / autolin

Repository containing a method for automatically identifying pathogen lineages from a phylogeny.
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Update Cadence and Issue Tracking #4

Open jmcbroome opened 2 years ago

jmcbroome commented 2 years ago

A significant open issue is how often this type of proposal routine should be run, and how to theoretically update an open proposal that has not been reviewed/accepted if new relevant data arrives. Not only is programatically tracking the identity of a lineage across a growing tree rather difficult, but whether and how often it is correct to retract/repropose an active proposal- or an already accepted lineage- is a complex issue. I'm interested in suggestions and feedback.