Do genotyped variants and true variant tend to match 1-to-1 or 1-to-many?
Interestingly some methods are "over-genotyping" and on true variant is matched to several genotyped variant. This is mostly for the HGSVC graph were there are potentially "duplicates" in the catalog. Some methods genotype each variant independently so they end up calling a variant in each of these duplicates.
Do genotyped variants and true variant tend to match 1-to-1 or 1-to-many?
Interestingly some methods are "over-genotyping" and on true variant is matched to several genotyped variant. This is mostly for the HGSVC graph were there are potentially "duplicates" in the catalog. Some methods genotype each variant independently so they end up calling a variant in each of these duplicates.