search

jmonlong / sQTLseekeR

R package to detect splicing QTLs (sQTLs)
http://big.crg.cat/computational_biology_of_rna_processing/sqtlseeker
15 stars 14 forks source link

splicing ratios #8

Open akulan1 opened 5 years ago

akulan1 commented 5 years ago

Hi Jean,

I am looking to plot the genotype versus the splicing ratio. The sQTLseekeR output has only one relative abundance per gene. Is there a way to output the relative abundance for all the transcripts of a gene?

Thank you very much.

Regards, Nirmala

jmonlong commented 5 years ago

Hi Nirmala,

Note that the package is now maintained at https://github.com/guigolab/sQTLseekeR so it is more up-to-date. In this repo there is a short tutorial that includes some graphs at the sQTL level, including the one below. Is this what you are looking for (all transcript of a gene for the different genotypes)?