Open kerstinth opened 2 years ago
Hi,
I keep getting the following error when trying to install the package. Could you help me with this please?
Best Wishes Kerstin
> BiocManager::install('jmonlong/sveval') 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details replacement repositories: CRAN: https://cran.rstudio.com/ Bioconductor version 3.15 (BiocManager 1.30.18), R 4.2.1 (2022-06-23) Installing github package(s) 'jmonlong/sveval' Downloading GitHub repo jmonlong/sveval@HEAD Skipping 1 packages ahead of CRAN: lifecycle ✔ checking for file ‘/private/var/folders/0z/hths1pn52h5536ml4ynhvrx40000gn/T/RtmpQ1V5uQ/remotes1345c15f5f760/jmonlong-sveval-55cc2e4/DESCRIPTION’ ... ─ preparing ‘sveval’: ✔ checking DESCRIPTION meta-information ... ─ cleaning src ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories Omitted ‘LazyData’ from DESCRIPTION ─ building ‘sveval_2.2.0.tar.gz’ * installing *source* package ‘sveval’ ... ** using staged installation ** libs clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c aldist.cpp -o aldist.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c edlib.cpp -o edlib.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c gzstream.cpp -o gzstream.o clang++ -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c merge-ac-svsites.cpp -o merge-ac-svsites.o merge-ac-svsites.cpp:23:62: error: a space is required between consecutive right angle brackets (use '> >') std::vector<std::string> svs = as<std::vector<std::string>>(sv_sites[ii]); ^~ > > merge-ac-svsites.cpp:204:62: error: a space is required between consecutive right angle brackets (use '> >') std::vector<std::string> svs = as<std::vector<std::string>>(sv_sites[ii]); ^~ > > 2 errors generated. make: *** [merge-ac-svsites.o] Error 1 ERROR: compilation failed for package ‘sveval’ * removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/sveval’ Warning message: In i.p(...) : installation of package ‘/var/folders/0z/hths1pn52h5536ml4ynhvrx40000gn/T//RtmpQ1V5uQ/file1345c4743cae3/sveval_2.2.0.tar.gz’ had non-zero exit status
could u solve this error?
Hi,
I keep getting the following error when trying to install the package. Could you help me with this please?
Best Wishes Kerstin