(READY) Make motif database-based reporting optional

jmschrei / tfmodisco-lite

A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.

MIT License

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Closed bytewife closed 1 year ago

bytewife commented 1 year ago

Fixes #5
Now when a motif database is provided, the report with the TOMTOM comparison will be written to motifs.tomtom.html

jmschrei commented 1 year ago

Can you provide a screenshot of what the report looks like when you don't pass the motif database?

bytewife commented 1 year ago

Sure,

for the command:

modisco report -i modisco_results.h5 -o report/

it outputs to reports/motifs.html:

and if we do:

modisco report -i modisco_results.h5 -o report/ -m JASPAR2022_CORE_vertebrates_non-redundant_pfms_meme.txt

it outputs to reports/motifs.tomtom.html: