Open anupamajha1 opened 1 year ago
I dug a little deeper, and the error stems from the following command in the code:
tomtom -no-ssc -oc . --verbosity 1 -text -min-overlap 5 -mi 1 -dist pearson -evalue -thresh 10.0 /tmp/296678579.1.noble-login.q/tmp7exmpd9d JASPAR2022_CORE_vertebrates_non-redundant_pfms_meme.txt
from here: https://github.com/jmschrei/tfmodisco-lite/blob/main/modiscolite/report.py#L111
I went and opened the tmp file, and that seems to be all zeros (screenshot attached)
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I am trying to compare JASPER motifs to motifs found by TF-modisco-lite using the following command:
Relevant files: report_all_modisco.tar.gz JASPAR2022_CORE_vertebrates_non-redundant_pfms_meme.txt heart_left_ventricle_random_2000_all_modisco_results.h5.gz
But I ran into the following error. I am attaching the files needed to reproduce this issue.