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jmschrei / tfmodisco-lite

A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
MIT License
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No motifs found #8

Open SalimMegat opened 1 year ago

SalimMegat commented 1 year ago

Hi,

I have tried to run modisco-lite on some of my sequences but unofortunately I do not get any motifs back. I have tried to generated a one-hot encoded sequences and numpy array from both the sequences and the hyp important score from my gkm-svm run but I got no results. Attached you'll find both npy files that I used as input. Also I used the fasta and score generated on the TF-modisco repo to make numpy array for modisco-lite and I also do not get any significant motif back. Am I doing something wrong ? Many thanks !

Best,

Salim. Archive.zip

jmschrei commented 1 year ago

Can you provide the command you're using to run it?