Open parkerstevenson opened 1 year ago
Hello!
I'm currently trying to convert my fGSEA result data.frame into an enrichResult for further processing using the enrichplot package, however, I'm currently getting the following error in response to this input:
> fgsea3_1res <-enrichDF2enrichResult( + enrichDF = fgsea3_1, + pvalueCutoff = 0.05, + pAdjustMethod = "BH", + keyColname = c("pathway"), + pathGenes = "leadingEdge", + geneColname = c("leadingEdge"), + geneHits = "geneHits", + geneRatioColname = c("GeneRatio", "^Ratio"), + geneDelim = ",", + geneSep = ",", + pvalueColname = c("pval", "padj"), + descriptionColname = c("pathway"), + msigdbGmtT = NULL, + verbose = FALSE, + ) Error in `[.data.frame`(x, i, j, drop) : undefined columns selected
Any advice is appreciated!
Hello!
I'm currently trying to convert my fGSEA result data.frame into an enrichResult for further processing using the enrichplot package, however, I'm currently getting the following error in response to this input:
Any advice is appreciated!