Closed LynnGoodnight closed 2 months ago
jmw86069
commented
2 months ago Thank you for reporting! I put in an update yesterday with changes to the underlying code, the tutorial should be working properly now. Let me know if you encounter any problems with version 0.0.31.900 or higher.
Issue #7 reported that render_venndir() is not working as expected. To be fair I usually use venndir() directly, which avoids that problem. However, that problem should be resolved within a day or so.
jmw86069
commented
2 months ago The underlying error should be fixed, please let me know if you encounter other errors, or have questions about how to do something. Thank you again for reporting the error!
LynnGoodnight
commented
2 months ago hi, thanks for your reply. sorry for my late reply. i re-install your package and test the same code agian
setlist_dir <- make_venn_test(100, 3, do_signed=TRUE)
setlist_dir
venndir(setlist_dir, overlap_type="each")
venndir(setlist_dir)> venndir(setlist_dir)
Error in c("factor", "ordered") %in% class(i) && TRUE %in% honorFactor :
'length = 2' in coercion to 'logical(1)'this error still persist.
sessionInfo() R version 4.4.0 (2024-04-24) Platform: x86_64-pc-linux-gnu Running under: Ubuntu 22.04.4 LTS
Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
locale:
[1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
time zone: Etc/UTC tzcode source: system (glibc)
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] farver_2.1.2 matrixStats_1.3.0 colorspace_2.1-0
[4] venndir_0.0.32.900
loaded via a namespace (and not attached):
[1] vctrs_0.6.5 ggbeeswarm_0.7.2 cli_3.6.2
[4] knitr_1.47 rlang_1.1.4 xfun_0.45
[7] colorjam_0.0.28.900 generics_0.1.3 data.table_1.15.4
[10] glue_1.7.0 htmltools_0.5.8.1 jamba_0.0.100.900
[13] fansi_1.0.6 scales_1.3.0 rmarkdown_2.27
[16] grid_4.4.0 evaluate_0.23 munsell_0.5.1
[19] tibble_3.2.1 fastmap_1.2.0 yaml_2.3.8
[22] lifecycle_1.0.4 BiocManager_1.30.23 vipor_0.4.7
[25] compiler_4.4.0 dplyr_1.1.4 pkgconfig_2.0.3
[28] rstudioapi_0.16.0 beeswarm_0.4.0 digest_0.6.35
[31] R6_2.5.1 tidyselect_1.2.1 utf8_1.2.4
[34] pillar_1.9.0 magrittr_2.0.3 tools_4.4.0
[37] gtable_0.3.5 ggplot2_3.5.1 remotes_2.5.0
Hi, recently I use your packages and encounter with this error message when I use the test example in your tutorial https://jmw86069.github.io/venndir/ :
Error in c("factor", "ordered") %in% class(i) && TRUE %in% honorFactor : 'length = 2' in coercion to 'logical(1)'
I also meet this error when I use my own data to run venndir function. I appreciate for your helps and thank for your great work :) .
Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
locale: [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
[5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
[7] LC_PAPER=en_GB.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
time zone: Etc/UTC tzcode source: system (glibc)
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] farver_2.1.2 matrixStats_1.3.0 colorspace_2.1-0 venndir_0.0.30.900 [5] vctrs_0.6.5
loaded via a namespace (and not attached): [1] digest_0.6.35 jamba_0.0.100.900 fastmap_1.2.0
[4] xfun_0.44 colorjam_0.0.28.900 knitr_1.47
[7] htmltools_0.5.8.1 rmarkdown_2.27 cli_3.6.2
[10] data.table_1.15.4 compiler_4.4.0 rstudioapi_0.16.0
[13] tools_4.4.0 evaluate_0.23 yaml_2.3.8
[16] rlang_1.1.4