jnalanko VOMM issues - Githubissues

jnalanko / VOMM

Space-efficient variable-order Markov models

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Bug in sdsl select support construction still exists

#25 jnalanko closed 5 years ago
1
--escapeprob with --lin-scoring?

#24 fcunial closed 6 years ago
2
implement the same scoring function as the competitor

#23 fcunial closed 6 years ago
3
improve storage of maxrep string depths

#22 jnalanko opened 6 years ago
0
command line switch to reuse an index?

#21 fcunial closed 6 years ago
6
Error writing to disk

#20 fcunial closed 6 years ago
4
candidate expects 3 arguments, 4 provided

#19 fcunial closed 6 years ago
1
Computing reverse BWT (todo: reuse the bibwt)

#18 jnalanko opened 6 years ago
1
Check that the output directory exists on startup

#17 jnalanko opened 6 years ago
0
do not store pruning data structures in the vanilla version of the index

#16 fcunial closed 6 years ago
1
give option to encode string depths of maxreps explicitly rather than using the SLT topology

#15 fcunial closed 6 years ago
2
Optimize scoring

#14 jnalanko closed 6 years ago
0
i think we should stream the query and the scores from/to disk using just two small buffers while scoring.

#13 jnalanko closed 6 years ago
0
does your algorithm behave correctly when a character in the query is not in the alphabet of the text?

#12 jnalanko closed 6 years ago
3
Maxrep iterator: don't go into non-maxrep part.

#11 jnalanko closed 6 years ago
1
Maxrep Iterator recursion stack can be big

#10 jnalanko closed 6 years ago
0
BPR building uses counters, i.e. 64+64 bits per character.

#9 jnalanko opened 6 years ago
32
Context stats

#8 jnalanko closed 6 years ago
2
BWT construction

#7 jnalanko opened 6 years ago
1
Run length coding

#6 jnalanko closed 6 years ago
0
Implement all ancestors scoring

#5 jnalanko opened 6 years ago
0
Score query strings in parallel

#4 jnalanko opened 6 years ago
0
Optimization: Use single-directional BWT for construction

#3 jnalanko opened 6 years ago
0
Optimization: use single-directional right-extend

#2 jnalanko closed 6 years ago
0
Check that have -O3 flags everywhere

#1 jnalanko closed 6 years ago
0