jni ray issues - Githubissues

jni / ray

Automatic segmentation of electron microscopy volumes

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Rework README example to use some of the test data included with the ray repo

#53 DocSavage opened 12 years ago
0
Ani selective agglo

#52 anirbanchakraborty closed 12 years ago
0
Add InclusivenessFeatureManager

#51 anirbanchakraborty closed 12 years ago
0
Save FeatureManager objects along with classifiers

#50 jni opened 12 years ago
0
Provide checks for command-line option consistency

#49 jni opened 12 years ago
0
Graph input is a label field, not a watershed

#48 jni opened 12 years ago
0
imio.read_image_stack fails when it is not provided with an extension

#47 jni closed 12 years ago
0
Watershed fails when values include inf

#46 jni opened 12 years ago
0
Support multiple learning modes

#45 jni closed 13 years ago
0
seeded watershed unconscionably slow when number of levels is large

#44 jni closed 12 years ago
2
Expected rand computation is not symmetrical between cases

#43 jni closed 13 years ago
0
add push-button interface to run entire pipeline

#42 jni closed 12 years ago
0
copy operation is not atomic

#41 jni opened 13 years ago
0
run RandomForest.fit() without feature importance when specified

#40 jni closed 13 years ago
1
Uniquify data points found by learn_agglomerate

#39 jni closed 13 years ago
1
add distutils support

#38 jni opened 13 years ago
0
Add decision trees as a weak learner for adaboost

#37 kenryd closed 13 years ago
1
edit feature manager test cases to include moment difference features

#36 jni closed 13 years ago
0
fix agglo.Rag.refine_post_merge_boundaries() for volumes with no boundary pixels

#35 jni closed 13 years ago
1
Enable progressbar for agglo.Rag.learn_agglomerate()

#34 jni opened 13 years ago
0
Add progress bar to RandomForest

#33 kenryd opened 13 years ago
1
Add support for watershed where shallow minima are removed

#32 kenryd closed 13 years ago
1
Add support for oriented watershed transform

#31 kenryd closed 13 years ago
2
ucm is incorrectly updated during agglomerate_ladder

#30 jni closed 12 years ago
0
Add one-shot agglomeration procedure.

#29 jni closed 13 years ago
1
allow different cache lengths for nodes and for boundaries

#28 jni closed 13 years ago
0
Add stochastic merging and consensus merge paths

#27 jni opened 13 years ago
0
add trainable normalized cut

#26 jni opened 13 years ago
0
Show errors given a body number and matching volume

#25 jni opened 13 years ago
1
add hyperbolic contour lines showing errors of same contribution in VOI breakdown plots

#24 jni closed 13 years ago
1
Run unique() on training data after compiling

#23 jni closed 13 years ago
1
ask Viren for LASH runtime + data

#22 jni closed 13 years ago
2
figure out difference between ∆VOI and assignment to learn labels.

#21 jni closed 13 years ago
1
paper outline

#20 jni closed 13 years ago
1
test performance of node split

#19 jni opened 13 years ago
0
test ray performance on natural images

#18 jni closed 13 years ago
1
need to add regression testing to critical ray.py components

#17 jni closed 13 years ago
1
Reorganize files

#16 jni closed 13 years ago
2
add squiggliness feature

#15 jni closed 13 years ago
2
add feature manager selection to the command-line interface

#14 jni closed 12 years ago
0
specify boundary width

#13 jni opened 13 years ago
0
Replace try: except: clauses with dict.setdefault() method

#12 jni closed 13 years ago
2
networkx.Graph is too heavyweight for our segmentation

#11 jni opened 13 years ago
1
refine_post_merge_boundaries may be vectorizable

#10 jni opened 13 years ago
0
change verbosity using logging module

#9 jni opened 13 years ago
0
Support backtracking in agglomeration with a tree structure for the history

#8 jni opened 13 years ago
1
feature manager update breaks mean, sem and n features

#7 jni closed 13 years ago
2
add boundary surface area feature

#6 jni closed 13 years ago
1
add support for multidimensional probability volume

#5 jni closed 13 years ago
2
add composite feature manager

#4 jni closed 13 years ago
1