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jni
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skan
Python module to analyse skeleton (thin object) images
https://skeleton-analysis.org
BSD 3-Clause "New" or "Revised" License
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Add numpy 2 compatibility
#229
jni
closed
3 months ago
0
SKAN Skeleton not compatible with numpy 2.0
#228
erberj
closed
3 months ago
6
SKAN C
#227
erberj
closed
3 months ago
0
conda install error
#226
smith6jt-cop
closed
4 months ago
1
Incorrect edge discovery when having two small loops
#225
jni
opened
5 months ago
1
Add function to make nx Graph from Skeleton
#224
ns-rse
closed
5 months ago
9
How to cite Skan
#223
ns-rse
opened
10 months ago
2
Docs build should be checked by CI
#222
jni
opened
10 months ago
0
Fix documentation builds
#221
jni
closed
10 months ago
0
Allow mean pixel value inference from int arrays, not just float
#220
TimMonko
closed
11 months ago
3
Data is always 1 despite input image
#219
TimMonko
closed
11 months ago
6
Update formatting on pyproject.toml to match skimage
#218
jni
closed
11 months ago
0
Use pyproject.toml for package metadata
#217
jni
closed
11 months ago
0
Pyproject.toml
#216
ns-rse
closed
11 months ago
2
Convert '-' to '_' in summary dataframe
#215
ns-rse
closed
10 months ago
11
Add support for iterative pruning based on user-specified discard conditions
#214
ns-rse
opened
11 months ago
16
Standardise package configuration on pyproject.toml
#213
ns-rse
closed
11 months ago
2
Improved error reporting and tests for prune_paths() methods
#212
ns-rse
closed
11 months ago
3
Napari plugin documentation
#211
haesleinhuepf
opened
1 year ago
1
cache skeleton_image shape for path_label_image
#210
jarodhanko-crafco
closed
12 months ago
3
path_lengths seems uncessarily slow for 2d Euclidean distance
#209
jarodhanko-crafco
closed
1 year ago
2
Skeleton.path_label_image requires keep_images=True
#208
jarodhanko-crafco
closed
12 months ago
3
Pending Deprecation in Numba 0.57.0.
#207
erberj
closed
1 year ago
3
ValueError: not enough values to unpack (expected 2, got 0)
#206
ns-rse
closed
11 months ago
12
Use sphinx-multiversion to build documentation
#205
ns-rse
closed
1 year ago
1
Prepare for v0.11.1
#204
jni
closed
1 year ago
0
Remove deprecated code from `io.py`
#203
jamesyan-git
closed
1 year ago
2
🐞 Bug Fix: Include `napari.yaml` in build
#202
jamesyan-git
closed
1 year ago
2
Add widget to generate shape layer and colour by features
#201
jamesyan-git
closed
11 months ago
1
Changed skeletonize plugin result to match labels colour
#200
jamesyan-git
closed
1 year ago
0
Update dependencies' minimum version according to NEP-29
#199
jni
closed
1 year ago
0
Update version to v0.12.0.dev0
#198
jni
closed
1 year ago
0
Improve docs on what the skan measurements actually mean
#197
GenevieveBuckley
opened
1 year ago
1
Add release notes for v0.11
#196
jni
closed
1 year ago
0
Minor cleanup of documentation
#195
jni
closed
1 year ago
0
Fix numerous docs and build issues
#194
jni
closed
1 year ago
0
fix n_points calculation (handling of 0-deg nodes), with tests
#193
jni
closed
1 year ago
0
skeletonize widget could work with integer labels
#192
jni
closed
1 year ago
0
0.11.0 release?
#191
rly
closed
1 year ago
3
Remove numpydoc [docs] requirement
#190
rly
closed
1 year ago
0
Use networkx 2.7 and replace deprecated fcn
#189
rly
closed
1 year ago
1
Move numpydoc req from install reqs to doc reqs
#188
rly
closed
1 year ago
1
Tests failing due to networkx 3 incompatibility
#187
rly
closed
1 year ago
1
Does numpydoc need to be an install_requires dependency?
#186
rly
closed
1 year ago
3
Consider using sybil to check docs are building correctly
#185
jni
opened
1 year ago
0
Add napari plugin with skeletonize widget
#184
jamesyan-git
closed
1 year ago
7
fix n_points calculation (handling of 0-deg nodes)
#183
ssavary
closed
1 year ago
3
_build_skeleton_path_graph() incorrectly handles degree-0 nodes in calculation of n_points
#182
ssavary
closed
1 year ago
2
Found a path not build
#181
fgbxx
opened
1 year ago
3
How to find endpoints and junction points?
#180
siddagra
opened
2 years ago
0
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