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jnicoleoliveira / SPECData

Interactive spectroscopic data analysis tool.
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Requirement pysqlite install failure #15

Open jnicoleoliveira opened 7 years ago

jnicoleoliveira commented 7 years ago

Anaconda environment has the following issue installing.. either a requirement issue or a fix needed:

Failed to build pysqlite
Installing collected packages: pysqlite
  Running setup.py install for pysqlite ... error
    Complete output from command /home/joli/tools/anaconda3/envs/2.7Envi/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-eRxqtg/pysqlite/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-SzVNXg-record/install-record.txt --single-version-externally-managed --compile:
    running install
    running build
    running build_py
    creating build
    creating build/lib.linux-x86_64-2.7
    creating build/lib.linux-x86_64-2.7/pysqlite2
    copying lib/__init__.py -> build/lib.linux-x86_64-2.7/pysqlite2
    copying lib/dbapi2.py -> build/lib.linux-x86_64-2.7/pysqlite2
    copying lib/dump.py -> build/lib.linux-x86_64-2.7/pysqlite2
    creating build/lib.linux-x86_64-2.7/pysqlite2/test
    copying lib/test/__init__.py -> build/lib.linux-x86_64-2.7/pysqlite2/test
    copying lib/test/dbapi.py -> build/lib.linux-x86_64-2.7/pysqlite2/test
    copying lib/test/dump.py -> build/lib.linux-x86_64-2.7/pysqlite2/test
    copying lib/test/factory.py -> build/lib.linux-x86_64-2.7/pysqlite2/test
    copying lib/test/hooks.py -> build/lib.linux-x86_64-2.7/pysqlite2/test
    copying lib/test/regression.py -> build/lib.linux-x86_64-2.7/pysqlite2/test
    copying lib/test/transactions.py -> build/lib.linux-x86_64-2.7/pysqlite2/test
    copying lib/test/types.py -> build/lib.linux-x86_64-2.7/pysqlite2/test
    copying lib/test/userfunctions.py -> build/lib.linux-x86_64-2.7/pysqlite2/test
    running build_ext
    building 'pysqlite2._sqlite' extension
    creating build/temp.linux-x86_64-2.7
    creating build/temp.linux-x86_64-2.7/src
    gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DMODULE_NAME="pysqlite2.dbapi2" -I/usr/local/include -I/home/joli/tools/anaconda3/envs/2.7Envi/include/python2.7 -c src/module.c -o build/temp.linux-x86_64-2.7/src/module.o
    /usr/lib64/gcc/x86_64-suse-linux/5.4.0/cc1: error while loading shared libraries: libgmp.so.3: cannot open shared object file: No such file or directory
    error: command 'gcc' failed with exit status 1
jnicoleoliveira commented 7 years ago

This may have been solved when adding the .yml environment files (for quick setup)... going to have to try to replicate the error.