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jo-mueller
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FociCounter
Performs auto-segmentation of cell nuclei. User then picks viable cells manually and the number of gH2AX foci are counted and their sizes measured.
MIT License
3
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2
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for cells without foci: print cell-averaged results to table
#20
langestef
closed
1 year ago
1
Introduce spheroid version
#19
jo-mueller
closed
1 year ago
0
Add size selection
#18
jo-mueller
closed
2 years ago
0
Update README.md
#17
jo-mueller
closed
2 years ago
0
spheroid distance map
#16
Franzi-ba
closed
1 year ago
3
Original publication of the script
#15
Theresa-S
closed
2 years ago
1
Improve documentation
#14
jo-mueller
closed
2 years ago
0
Removed duplicate `CellSeg` function
#13
jo-mueller
closed
2 years ago
0
save cell-wise images
#12
Franzi-ba
opened
2 years ago
3
Readme too short
#11
Theresa-S
closed
2 years ago
3
StarDist not working in larger images
#10
Theresa-S
closed
2 years ago
0
Contains deprecated code
#9
Theresa-S
closed
2 years ago
0
Script crashes on filename retrieval
#8
jo-mueller
closed
2 years ago
0
Fixed variable name bug
#7
jo-mueller
closed
2 years ago
0
The script not able to run an analysis on a folder
#6
Treewut
opened
3 years ago
0
Make variant of script iterate through directory
#5
jo-mueller
closed
3 years ago
1
Split results in two tables
#4
jo-mueller
closed
3 years ago
1
Foci plausibility threshold
#3
jo-mueller
opened
3 years ago
0
Add option to GUI: Exclude cells at edge
#2
jo-mueller
closed
3 years ago
2
Script crashes at one specific cell
#1
Theresa-S
opened
4 years ago
0