Crashes when plotting time-toggled data

[stefaniamagg]

Warning: Error in mb.2D: The sample sizes or the biological condition group assignments are incorrect! 77: stop 76: mb.2D 73: performMB 72: observeEventHandler [/Users/smagnusdottir/Git/MetaboShiny/server.R#1207] 1: shiny::runApp

[joannawolthuis]

Heyyo : - ) you did this with the cat data right? What experimental value were you checking out?

[stefaniamagg]

When creating the csv I chose "group" and for the analysis it was just the defaults; I think it sets it to "sex" by default when loading in the data?

[joannawolthuis]

i'll take a look - i can't reproduce it w/ 'group identification/description' as variable, but i suspect there are some variables with only one level, or more than two levels, making problems :-V

[stefaniamagg]

I've tried a few different variables, changing "Do statistics on" to "group identification/description", "sex", etc doesn't matter, they all crash. Done on the cat data where I selected the variable "group" as "Which variable represents sample amount/concentration?" (the drop-down list doesn't display "group identification/description" as an option there).

[joannawolthuis]

hmm, this is strange!! what do you pick for the rest for normalization?

[stefaniamagg]

Max. missing feature: 1%, m/z filter: None, normalization: Quantile, transform: log, scale: autoscale, missing values: random forest

[stefaniamagg]

Exclude outliers: yes

[joannawolthuis]

alright :-) let's see if i can reproduce if i start from scratch

[joannawolthuis]

should be fixed now, auto-disables outlier removal for time series as a temp solution ^^