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joannawolthuis / MetaboShiny

Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.
https://www.biorxiv.org/content/10.1101/734236v1
Apache License 2.0
15 stars 9 forks source link

Foodb building crash #26

Closed stefaniamagg closed 5 years ago

stefaniamagg commented 5 years ago

Loading required package: bitops trying URL 'http://www.foodb.ca/system/foodb_2017_06_29_csv.tar.gz' Content type 'application/octet-stream' length 33299356 bytes (31.8 MB)

downloaded 31.8 MB

Warning: Error in data.table::fread: File '/Users/smagnusdottir/Git/MetaboShiny/backend/db/foodb_source/foodb_2017_06_29_csv/compounds.csv' does not exist or is non-readable. getwd()=='/Users/smagnusdottir/Git/MetaboShiny' 79: stop 78: data.table::fread 77: function.of.choice [backend/scripts/joanna/db.building.R#1233] 76: build.base.db [backend/scripts/joanna/db.building.R#1328] 72: observeEventHandler [./backend/scripts/joanna/reactive/metabolitedbs.R#30] 1: shiny::runApp

joannawolthuis commented 5 years ago

hmmmm! I've been looking at this, but I cannot reproduce it more than one time (I did the first time by deleting the foodb files and folders in the DB folder. Can you maybe update to the last version and see if it persists? :)

stefaniamagg commented 5 years ago

Worked now, thanks! :)