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joannawolthuis / MetaboShiny

Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.
https://www.biorxiv.org/content/10.1101/734236v1
Apache License 2.0
15 stars 9 forks source link

Cannot start on Mac OSX docker-machine. #45

Open ahmohamed opened 4 years ago

ahmohamed commented 4 years ago

Thanks for making MetaboShiny. I tried running the package using docker-machine (Basically docker-toolbox) on MacOSX, but it fails to render the app. This is the log on terminal.

Listening on http://0.0.0.0:8080
Warning: Since v0.2.0, there is no need to call includeJqueryUI() before using other shinyjqui functions
Warning in if (getAttribs(panels[[i]])$value %in% open) { :
  the condition has length > 1 and only the first element will be used
Loading required package: tidytext
Loading required package: classyfireR
Loading required package: magrittr
Warning: no DISPLAY variable so Tk is not available

The web app opens in browser, but the spinner keeps running forever. I can see notifications Welcome new user, but that is it. I suspect Tk to potentially cause the issue (?). Any suggestions?

Thanks. Ahmed.

ahmohamed commented 4 years ago

Just an update. It does start, but takes a very looong time (>30 minutes!). Also, the interface lags a lot while using it, and keeps showing spinner for minutes.

joannawolthuis commented 4 years ago

Hi there! Thanks for your interest :) That should definitely not take that long - how much memory are you giving docker?