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joannawolthuis / MetaboShiny

Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.
https://www.biorxiv.org/content/10.1101/734236v1
Apache License 2.0
16 stars 9 forks source link

MetaboShiny Doesn't Exist! #52

Open rballachay opened 3 years ago

rballachay commented 3 years ago

Hi, I have followed all the steps in the file inst/install.metshi.R for installation through RStudio. I think this package may not be supported by my newer version of R (4.0.5). Suggestions? Thx.

joannawolthuis commented 3 years ago

Hi there! Thanks for your interest and apologies for the inconvenience. Would you mind trying the install.metshi in the 'dev' github branch? I need to update the master branch asap, but the dev branch is currently more up to date. :)

On Thu, May 13, 2021, 9:09 PM rballachay @.***> wrote:

Hi, I have followed all the steps in the file inst/install.metshi.R for installation through RStudio. I think this package may not be supported by my newer version of R (4.0.5). Suggestions? Thx.

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rballachay commented 3 years ago

It almost worked, the shiny app launched but it looks like there was a compilation error with the following output:

ERROR: compilation failed for package ‘MetaboAnalystR’

Thx for the help.

joannawolthuis commented 3 years ago

Hi there, happy that helped! Was there any more output? :O perhaps specific libraries required by the MetaboAnalystR package? The docker version is also an option perhaps, it may save some time setting up.

On Thu, May 13, 2021, 9:46 PM rballachay @.***> wrote:

It almost worked, the shiny app launched but it looks like there was a compilation error with the following output:

ERROR: compilation failed for package ‘MetaboAnalystR’

  • removing ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library/MetaboAnalystR’ Warning in loadSupport(appDir, renv = sharedEnv, globalrenv = globalenv()) : Loading R/ subdirectory for Shiny application, but this directory appears to contain an R package. Sourcing files in R/ may cause unexpected behavior.

Thx for the help.

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