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joannawolthuis / MetaboShiny

Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.
https://www.biorxiv.org/content/10.1101/734236v1
Apache License 2.0
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Deprecated package SSPA #55

Open Sbsten opened 2 years ago

Sbsten commented 2 years ago

Hi Joanna,

I'm trying to install Metaboshiny but the package "SSPA" is deprecated and can't be installed on the newer R versions. Do you have any sugestion to circumvent this problem ?

Thanks in advance

joannawolthuis commented 2 years ago

Hi there :) Thank you for your interest in MetShi! Can you confirm if you're on the master branch or dev branch? If you're on the master branch, please give the dev branch a try first. I'm merging it again soon with master but still want to adjust some things!

Sbsten commented 2 years ago

Hi ! Thanks for your reply. I was using the master branch, I'll give a try to the dev one and let you know !

Sbsten commented 2 years ago

I'm a bit confused cause the install.metchi.R is the same for dev and master. I'll try docker instead.

joannawolthuis commented 2 years ago

Ah, I see! I'll double check, strangely I haven't had issues but perhaps it's a recent change to SSPA. Docker (dev branch preferably) should work fine. :)

Sbsten commented 2 years ago

Docker installation seemed to work fine ! Thanks a lot