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jodyphelan
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TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
GNU General Public License v3.0
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#297
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jodyphelan
closed
11 months ago
jodyphelan
commented
11 months ago
Changes
Remove PDF support
Use sqlite3 db to store snp difference from refrence
Phylogenetic functionality with usher and iqtree
Possibility to use user-defined python function to update results (e.g. can be used to fix mmpL5/mmpR5 homoplasy)
Added hard and soft filtering for variants
Added tb-profiler-tools script which will be used to add functions that are not core to tb-profiler
Changes