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jodyphelan / TBProfiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
GNU General Public License v3.0
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snp_dist freq #325

Closed jloubser closed 7 months ago

jloubser commented 8 months ago

Hi Jody,

Maybe a silly question, but with the snp-dist, is the default frequency of 0.1 still applied? Or if I want only fixed variants in this comparison I'd need to add a freq cut-off in my command?