Question about source of tbdb.spoligotype_list.csv

jodyphelan / TBProfiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

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Question about source of tbdb.spoligotype_list.csv #341

Open RikkeMLarsen opened 5 months ago

RikkeMLarsen commented 5 months ago

I was wondering what the source of the reference file for spoligotyping "tbdb.spoligotype_list.csv" is and how it is generated? It seems to be from SITVIT2 given the lineage column with the same name, but I haven't been able to track down an exact source file?

Thank you for your help, Rikke

jodyphelan commented 5 months ago

Hi @RikkeMLarsen

Yes the data is indeed from SITVIT2 and ahe data was given by by the developers.