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jodyphelan / TBProfiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
GNU General Public License v3.0
104 stars 43 forks source link

Temporary files #354

Closed MarcNiebel closed 4 months ago

MarcNiebel commented 4 months ago

Just started using your tool @jodyphelan and really like it 👍 I was wondering if there is a way to get temporary files that are created? The reason I am asking for this option is to look at summarising software versions and also carry out quality control on my samples.

jodyphelan commented 4 months ago

Hi @MarcNiebel,

Thanks glad it is useful for you. If the --no_clean option is run it won't remove temporary files, however these will start with a random prefix so you'll have to run some custom code to rename them to something more useful probably. I could look into saving these with the same file prefix as designated by --prefix in a future release potentially

MarcNiebel commented 4 months ago

Hi @jodyphelan ,

Thanks for your response. No urgency regarding the --prefix option although would be beneficial