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jodyphelan / TBProfiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
GNU General Public License v3.0
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Close Samples #356

Closed jodyphelan closed 6 months ago

jodyphelan commented 6 months ago

Discussed in https://github.com/jodyphelan/TBProfiler/discussions/352

Originally posted by **duncanca** May 3, 2024 I have upgraded from v4.4.2 to 6.2.0. Has the close sample option been removed? I am using the ---call_whole_genome and --snp_dist arguments, no errors are generated but the close samples report section is gone. A binary file snp_diffs.db is generated but I am unsure how to visualize this data. I found the close sample report very useful to quickly identify related cases and I am hoping this will still be supported.