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jodyphelan / TBProfiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
GNU General Public License v3.0
104 stars 43 forks source link

cannot find in Anacodon #363

Closed alantsangmb closed 4 months ago

alantsangmb commented 4 months ago

I was unable to find TBProfiler version 6.2.1 in anacodon. Will it be available in anacodon at a later time? Thank you.

jodyphelan commented 4 months ago

Hi @alantsangmb

There is currently an issue with bioconda CI which is blocking the uppdate being merged into bioconda. I'll update as soon as it is resolved.

In the mean time, if you would like access to the latest features, you can update to the latest version manually by installing into an existing evironment with tb-profiler installed using:

pip install --force-reinstall git+https://github.com/jodyphelan/TBProfiler.git
pip install --force-reinstall git+https://github.com/jodyphelan/pathogen-profiler.git
alantsangmb commented 4 months ago

Thank you @jodyphelan

The package is now available in Anacodon, and I am hereby closing this issue.