Error message running malaria-profiler update_db

[suhanyaPrasad]

Hi, I have noticed this issue upon installation. 36c522f1-2a95-48b8-808a-c2916f3e55d9.errlog.txt

malaria_profiler error report

• OS: linux
• malaria-profiler version: 0.0.5
• pathogen-profiler version: 4.2.0
• Program call:

  {'no_cleanup': False, 'logging': 'INFO', 'branch': 'main', 'dir': '.', 'func': <function main_update_db at 0x7f7a7e47eb60>, 'software_name': 'malaria_profiler', 'tmp_prefix': '26a1b43f-b4f7-4ccd-b5ef-15c4db2ae804', 'files_prefix': './26a1b43f-b4f7-4ccd-b5ef-15c4db2ae804'}

  Traceback:

  File "/home/suhan92/miniconda3/envs/malaria-profiler/bin/malaria-profiler", line 370, in <module>
  args.func(args)
  File "/home/suhan92/miniconda3/envs/malaria-profiler/bin/malaria-profiler", line 219, in main_update_db
  pp.run_cmd(f'malaria-profiler create_resistance_db --prefix {species.replace(" ","_")} {csv_arg} --watchlist gene_watchlist.csv --load')
  File "/home/suhan92/miniconda3/envs/malaria-profiler/lib/python3.12/site-packages/pathogenprofiler/utils.py", line 486, in run_cmd
  raise ValueError("Command Failed:\n%s\nstderr:\n%s" % (cmd,result.stderr.decode()))

[jodyphelan]

This is a bug which will be fixed in the next version. We are aiming to release this next week.