[Errno 2] No such file or directory: 'genes.txt'

[ryobon-dev]

I downloaded tbdb-master and run python parse_db.py.

However, the following error messages appeared. Could you please let me know how I can fix the issue ?

(base) kansensho@DESKTOP-QBEDU0F:/mnt/e/Desktop/tool/tbdb-master$ ls LICENCE genome.fasta scripts tbdb.csv variables.json README.md genome.gff spoligotype_list.csv tbdb.other_annotations.csv barcode.bed parse_db.py spoligotype_spacers.txt tbdb.watchlist.csv (base) kansensho@DESKTOP-QBEDU0F:/mnt/e/Desktop/tool/tbdb-master$ python parse_db.py Traceback (most recent call last): File "/mnt/e/Desktop/tool/tbdb-master/parse_db.py", line 281, in args.func(args) File "/mnt/e/Desktop/tool/tbdb-master/parse_db.py", line 202, in main gene_info = load_gene_info("genes.txt") File "/mnt/e/Desktop/tool/tbdb-master/parse_db.py", line 187, in load_gene_info for l in open(filename): FileNotFoundError: [Errno 2] No such file or directory: 'genes.txt'

[mbhall88]

I also raised this in #45

[jodyphelan]

Thanks @mbhall88, I've now updated the documentation to remove references the parse_db.py script. @ryobon-dev Please refer to https://github.com/jodyphelan/TBProfiler for instructions on how to create the database files for tb-profiler