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jodyphelan / tbdb

Standard database for the TBProfiler tool
GNU Lesser General Public License v3.0
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inconsistent who_confidence #53

Open alantsangmb opened 1 year ago

alantsangmb commented 1 year ago

In the tbdb.other_annotations.csv file, I found that different who_confidence were assigned to the same mutation in the same gene. The following are the examples I spotted:

Gene Mutation Type Info whiB6 c.-75del who_confidence drug=amikacin;who_confidence=Not assoc w R whiB6 c.-75del who_confidence drug=amikacin;who_confidence=Uncertain significance

Gene Mutation Type Info Rv1258c c.580_581insC who_confidence drug=isoniazid;who_confidence=Uncertain significance Rv1258c c.580_581insC who_confidence drug=isoniazid;who_confidence=Not assoc w R Rv1258c c.580_581insC who_confidence drug=streptomycin;who_confidence=Uncertain significance Rv1258c c.580_581insC who_confidence drug=streptomycin;who_confidence=Not assoc w R Rv1258c c.580_581insC who_confidence drug=pyrazinamide;who_confidence=Uncertain significance Rv1258c c.580_581insC who_confidence drug=pyrazinamide;who_confidence=Not assoc w R

jodyphelan commented 1 year ago

Hi @alantsangmb ,

Thanks for bringing this to our attention. I'll have a look at it and get back to you asap.