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joergen7 / cuneiform-legacy

A Functional Workflow Language
Apache License 2.0
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Channel information is not correctly resolved in nested applications #99

Closed joergen7 closed 10 years ago

joergen7 commented 10 years ago 
deftask process( details( File ) region( File ) summit( File ) : <ip-fastq( File )> ctl-fastq( File )> <idx( File )> pvalue ) {

    bwa-align(
        idx   : idx
        fastq : ctl-fastq
    )                                      -+
                                            |
                                            |
    bwa-align(                              |
        idx   : idx                         |
        fastq : ip-fastq                    |
    )                           -+          |
                                 |          |
                                 |          |
    details region summit = peakranger-ranger(
        pvalue  : pvalue         |          |
        data    : <--------------+          |
        control : <-------------------------+
    );
}