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joey711 / biom

Development version of the biom package for R
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package ‘biom’ was installed before R 4.0.0: please re-install it #37

Open xtwu98 opened 1 year ago

xtwu98 commented 1 year ago

The package 'biom' has been installed by devtools::install_github("joey711/biom") and can be successfully load by library(biom) when i run the bugbase run.bugbase.r -i $BUGBASE_PATH/doc/data/HMP_s15.txt -m $BUGBASE_PATH/doc/data/HMP_map.txt -c HMPBODYSUBSITE -o output the error comes out error: package or namespace load failed for ‘biom’: package ‘biom’ was installed before R 4.0.0: please re-install it.

how to fix this problem? my bioconductor version 3.14 (BiocManager 1.30.19)，R 4.1.2 (2021-11-01), biom 0.4.0

dzw893246344 commented 3 weeks ago

The package 'biom' has been installed by devtools::install_github("joey711/biom") and can be successfully load by library(biom) when i run the bugbase run.bugbase.r -i $BUGBASE_PATH/doc/data/HMP_s15.txt -m $BUGBASE_PATH/doc/data/HMP_map.txt -c HMPBODYSUBSITE -o output the error comes out error: package or namespace load failed for ‘biom’: package ‘biom’ was installed before R 4.0.0: please re-install it.

how to fix this problem? my bioconductor version 3.14 (BiocManager 1.30.19)，R 4.1.2 (2021-11-01), biom 0.4.0 Change "# library(biom)" to "library(biom)" in line 45 of the file run.bugbase.r