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joey711 / biomformat-oldfork

This is deprecated. Please post issues at the BioC-synced joey711/biomformat
https://github.com/joey711/biomformat
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Add script to test write_biom output based on python lib #5

Open joey711 opened 7 years ago

joey711 commented 7 years ago

Script would go in inst/scripts and be run as external shell command (e.g. system) from a new unit test, creating an implicit Suggests-type testing dependency on the availability of an up-to-date biom-format python library

https://github.com/joey711/biomformat/issues/4#issuecomment-294563560

joey711 commented 7 years ago

The main point is to avoid re-implementing the validation tests from the python library, and to more quickly identify bugs as format specs/validation change.