phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
I have a question on how to perform these analysis: I used three different markers to identify eaten plants in my samples. So I have same DNA extractions, then two different PCR (not three because one of them was done in multiplex). I used different markers to increase resolution.
I would like to obtain a final dataset in which I substitute the relative abundances of the genera found in marker 2 and 3 in the table of marker 1. I don't know if it is clear...
So, I managed to obtain the the three different tables and to intersect them (in Excel), but of course at the end I have a dataframe, not a phyloseq object. Is there a way to do so?
Hi all,
I have a question on how to perform these analysis: I used three different markers to identify eaten plants in my samples. So I have same DNA extractions, then two different PCR (not three because one of them was done in multiplex). I used different markers to increase resolution.
I would like to obtain a final dataset in which I substitute the relative abundances of the genera found in marker 2 and 3 in the table of marker 1. I don't know if it is clear...
So, I managed to obtain the the three different tables and to intersect them (in Excel), but of course at the end I have a dataframe, not a phyloseq object. Is there a way to do so?
Thank you